Getting started with Tensorflow, Keras in Python and R

The Pale Blue Dot

“From this distant vantage point, the Earth might not seem of any particular interest. But for us, it’s different. Consider again that dot. That’s here, that’s home, that’s us. On it everyone you love, everyone you know, everyone you ever heard of, every human being who ever was, lived out their lives. The aggregate of our joy and suffering, thousands of confident religions, ideologies, and economic doctrines, every hunter and forager, every hero and coward, every creator and destroyer of civilization, every king and peasant, every young couple in love, every mother and father, hopeful child, inventor and explorer, every teacher of morals, every corrupt politician, every “superstar,” every “supreme leader,” every saint and sinner in the history of our species lived there—on the mote of dust suspended in a sunbeam.”

Carl Sagan

Tensorflow and Keras are Deep Learning frameworks that really simplify a lot of things to the user. If you are familiar with Machine Learning and Deep Learning concepts then Tensorflow and Keras are really a playground to realize your ideas.  In this post I show how you can get started with Tensorflow in both Python and R

 

Tensorflow in Python

For tensorflow in Python, I found Google’s Colab an ideal environment for running your Deep Learning code. This is an Google’s research project  where you can execute your code  on GPUs, TPUs etc

Tensorflow in R (RStudio)

To execute tensorflow in R (RStudio) you need to install tensorflow and keras as shown below
In this post I show how to get started with Tensorflow and Keras in R.

# Install Tensorflow in RStudio
#install_tensorflow()
# Install Keras
#install_packages("keras")
library(tensorflow)
libary(keras)

This post takes 3 different Machine Learning problems and uses the
Tensorflow/Keras framework to solve it

Note:
You can view the Google Colab notebook at Tensorflow in Python
The RMarkdown file has been published at RPubs and can be accessed
at Getting started with Tensorflow in R

Checkout my book ‘Deep Learning from first principles: Second Edition – In vectorized Python, R and Octave’. My book starts with the implementation of a simple 2-layer Neural Network and works its way to a generic L-Layer Deep Learning Network, with all the bells and whistles. The derivations have been discussed in detail. The code has been extensively commented and included in its entirety in the Appendix sections. My book is available on Amazon as paperback ($14.99) and in kindle version($9.99/Rs449).

1. Multivariate regression with Tensorflow – Python

This code performs multivariate regression using Tensorflow and keras on the advent of Parkinson disease through sound recordings see Parkinson Speech Dataset with Multiple Types of Sound Recordings Data Set . The clinician’s motorUPDRS score has to be predicted from the set of features

In [0]:
# Import tensorflow
import tensorflow as tf
from tensorflow import keras
In [2]:
#Get the data rom the UCI Machine Learning repository
dataset = keras.utils.get_file("parkinsons_updrs.data", "https://archive.ics.uci.edu/ml/machine-learning-databases/parkinsons/telemonitoring/parkinsons_updrs.data")
Downloading data from https://archive.ics.uci.edu/ml/machine-learning-databases/parkinsons/telemonitoring/parkinsons_updrs.data
917504/911261 [==============================] - 0s 0us/step
In [3]:
# Read the CSV file 
import pandas as pd
parkinsons = pd.read_csv(dataset, na_values = "?", comment='\t',
                      sep=",", skipinitialspace=True)
print(parkinsons.shape)
print(parkinsons.columns)
#Check if there are any NAs in the rows
parkinsons.isna().sum()
(5875, 22)
Index(['subject#', 'age', 'sex', 'test_time', 'motor_UPDRS', 'total_UPDRS',
       'Jitter(%)', 'Jitter(Abs)', 'Jitter:RAP', 'Jitter:PPQ5', 'Jitter:DDP',
       'Shimmer', 'Shimmer(dB)', 'Shimmer:APQ3', 'Shimmer:APQ5',
       'Shimmer:APQ11', 'Shimmer:DDA', 'NHR', 'HNR', 'RPDE', 'DFA', 'PPE'],
      dtype='object')
Out[3]:
subject#         0
age              0
sex              0
test_time        0
motor_UPDRS      0
total_UPDRS      0
Jitter(%)        0
Jitter(Abs)      0
Jitter:RAP       0
Jitter:PPQ5      0
Jitter:DDP       0
Shimmer          0
Shimmer(dB)      0
Shimmer:APQ3     0
Shimmer:APQ5     0
Shimmer:APQ11    0
Shimmer:DDA      0
NHR              0
HNR              0
RPDE             0
DFA              0
PPE              0
dtype: int64
Note: To see how to create dummy variables see my post Practical Machine Learning with R and Python – Part 2
In [4]:
# Drop the columns subject number as it is not relevant
parkinsons1=parkinsons.drop(['subject#'],axis=1)

# Create dummy variables for sex (M/F)
parkinsons2=pd.get_dummies(parkinsons1,columns=['sex'])
parkinsons2.head()

Out[4]
age test_time motor_UPDRS total_UPDRS Jitter(%) Jitter(Abs) Jitter:RAP Jitter:PPQ5 Jitter:DDP Shimmer Shimmer(dB) Shimmer:APQ3 Shimmer:APQ5 Shimmer:APQ11 Shimmer:DDA NHR HNR RPDE DFA PPE sex_0 sex_1
0 72 5.6431 28.199 34.398 0.00662 0.000034 0.00401 0.00317 0.01204 0.02565 0.230 0.01438 0.01309 0.01662 0.04314 0.014290 21.640 0.41888 0.54842 0.16006 1 0
1 72 12.6660 28.447 34.894 0.00300 0.000017 0.00132 0.00150 0.00395 0.02024 0.179 0.00994 0.01072 0.01689 0.02982 0.011112 27.183 0.43493 0.56477 0.10810 1 0
2 72 19.6810 28.695 35.389 0.00481 0.000025 0.00205 0.00208 0.00616 0.01675 0.181 0.00734 0.00844 0.01458 0.02202 0.020220 23.047 0.46222 0.54405 0.21014 1 0
3 72 25.6470 28.905 35.810 0.00528 0.000027 0.00191 0.00264 0.00573 0.02309 0.327 0.01106 0.01265 0.01963 0.03317 0.027837 24.445 0.48730 0.57794 0.33277 1 0
4 72 33.6420 29.187 36.375 0.00335 0.000020 0.00093 0.00130 0.00278 0.01703 0.176 0.00679 0.00929 0.01819 0.02036 0.011625 26.126 0.47188 0.56122 0.19361 1 0

# Create a training and test data set with 80%/20%
train_dataset = parkinsons2.sample(frac=0.8,random_state=0)
test_dataset = parkinsons2.drop(train_dataset.index)

# Select columns
train_dataset1= train_dataset[['age', 'test_time', 'Jitter(%)', 'Jitter(Abs)',
       'Jitter:RAP', 'Jitter:PPQ5', 'Jitter:DDP', 'Shimmer', 'Shimmer(dB)',
       'Shimmer:APQ3', 'Shimmer:APQ5', 'Shimmer:APQ11', 'Shimmer:DDA', 'NHR',
       'HNR', 'RPDE', 'DFA', 'PPE', 'sex_0', 'sex_1']]
test_dataset1= test_dataset[['age','test_time', 'Jitter(%)', 'Jitter(Abs)',
       'Jitter:RAP', 'Jitter:PPQ5', 'Jitter:DDP', 'Shimmer', 'Shimmer(dB)',
       'Shimmer:APQ3', 'Shimmer:APQ5', 'Shimmer:APQ11', 'Shimmer:DDA', 'NHR',
       'HNR', 'RPDE', 'DFA', 'PPE', 'sex_0', 'sex_1']]
In [7]:
# Generate the statistics of the columns for use in normalization of the data
train_stats = train_dataset1.describe()
train_stats = train_stats.transpose()
train_stats
Out[7]:
count mean std min 25% 50% 75% max
age 4700.0 64.792766 8.870401 36.000000 58.000000 65.000000 72.000000 85.000000
test_time 4700.0 93.399490 53.630411 -4.262500 46.852250 93.405000 139.367500 215.490000
Jitter(%) 4700.0 0.006136 0.005612 0.000830 0.003560 0.004900 0.006770 0.099990
Jitter(Abs) 4700.0 0.000044 0.000036 0.000002 0.000022 0.000034 0.000053 0.000396
Jitter:RAP 4700.0 0.002969 0.003089 0.000330 0.001570 0.002235 0.003260 0.057540
Jitter:PPQ5 4700.0 0.003271 0.003760 0.000430 0.001810 0.002480 0.003460 0.069560
Jitter:DDP 4700.0 0.008908 0.009267 0.000980 0.004710 0.006705 0.009790 0.172630
Shimmer 4700.0 0.033992 0.025922 0.003060 0.019020 0.027385 0.039810 0.268630
Shimmer(dB) 4700.0 0.310487 0.231016 0.026000 0.175000 0.251000 0.363250 2.107000
Shimmer:APQ3 4700.0 0.017125 0.013275 0.001610 0.009190 0.013615 0.020562 0.162670
Shimmer:APQ5 4700.0 0.020151 0.016848 0.001940 0.010750 0.015785 0.023733 0.167020
Shimmer:APQ11 4700.0 0.027508 0.020270 0.002490 0.015630 0.022685 0.032713 0.275460
Shimmer:DDA 4700.0 0.051375 0.039826 0.004840 0.027567 0.040845 0.061683 0.488020
NHR 4700.0 0.032116 0.060206 0.000304 0.010827 0.018403 0.031452 0.748260
HNR 4700.0 21.704631 4.288853 1.659000 19.447750 21.973000 24.445250 37.187000
RPDE 4700.0 0.542549 0.100212 0.151020 0.471235 0.543490 0.614335 0.966080
DFA 4700.0 0.653015 0.070446 0.514040 0.596470 0.643285 0.710618 0.865600
PPE 4700.0 0.219559 0.091506 0.021983 0.156470 0.205340 0.264017 0.731730
sex_0 4700.0 0.681489 0.465948 0.000000 0.000000 1.000000 1.000000 1.000000
sex_1 4700.0 0.318511 0.465948 0.000000 0.000000 0.000000 1.000000 1.000000
In [0]:
# Create the target variable
train_labels = train_dataset.pop('motor_UPDRS')
test_labels = test_dataset.pop('motor_UPDRS')
In [0]:
# Normalize the data by subtracting the mean and dividing by the standard deviation
def normalize(x):
  return (x - train_stats['mean']) / train_stats['std']

# Create normalized training and test data
normalized_train_data = normalize(train_dataset1)
normalized_test_data = normalize(test_dataset1)
In [0]:
# Create a Deep Learning model with keras
model = tf.keras.Sequential([
    keras.layers.Dense(6, activation=tf.nn.relu, input_shape=[len(train_dataset1.keys())]),
    keras.layers.Dense(9, activation=tf.nn.relu),
    keras.layers.Dense(6,activation=tf.nn.relu),
    keras.layers.Dense(1)
  ])

# Use the Adam optimizer with a learning rate of 0.01
optimizer=keras.optimizers.Adam(lr=.01, beta_1=0.9, beta_2=0.999, epsilon=None, decay=0.0, amsgrad=False)

# Set the metrics required to be Mean Absolute Error and Mean Squared Error.For regression, the loss is mean_squared_error
model.compile(loss='mean_squared_error',
                optimizer=optimizer,
                metrics=['mean_absolute_error', 'mean_squared_error'])
In [0]:
# Create a model
history=model.fit(
  normalized_train_data, train_labels,
  epochs=1000, validation_data = (normalized_test_data,test_labels), verbose=0)
In [26]:
hist = pd.DataFrame(history.history)
hist['epoch'] = history.epoch
hist.tail()
Out[26]:
loss mean_absolute_error mean_squared_error val_loss val_mean_absolute_error val_mean_squared_error epoch
995 15.773989 2.936990 15.773988 16.980803 3.028168 16.980803 995
996 15.238623 2.873420 15.238622 17.458752 3.101033 17.458752 996
997 15.437594 2.895500 15.437593 16.926016 2.971508 16.926018 997
998 15.867891 2.943521 15.867892 16.950249 2.985036 16.950249 998
999 15.846878 2.938914 15.846880 17.095623 3.014504 17.095625 999
In [30]:
def plot_history(history):
  hist = pd.DataFrame(history.history)
  hist['epoch'] = history.epoch

  plt.figure()
  plt.xlabel('Epoch')
  plt.ylabel('Mean Abs Error')
  plt.plot(hist['epoch'], hist['mean_absolute_error'],
           label='Train Error')
  plt.plot(hist['epoch'], hist['val_mean_absolute_error'],
           label = 'Val Error')
  plt.ylim([2,5])
  plt.legend()

  plt.figure()
  plt.xlabel('Epoch')
  plt.ylabel('Mean Square Error ')
  plt.plot(hist['epoch'], hist['mean_squared_error'],
           label='Train Error')
  plt.plot(hist['epoch'], hist['val_mean_squared_error'],
           label = 'Val Error')
  plt.ylim([10,40])
  plt.legend()
  plt.show()


plot_history(history)

Observation

It can be seen that the mean absolute error is on an average about +/- 4.0. The validation error also is about the same. This can be reduced by playing around with the hyperparamaters and increasing the number of iterations

1a. Multivariate Regression in Tensorflow – R

# Install Tensorflow in RStudio
#install_tensorflow()
# Install Keras
#install_packages("keras")
library(tensorflow)
library(keras)
library(dplyr)
library(dummies)
## dummies-1.5.6 provided by Decision Patterns
library(tensorflow)
library(keras)

Multivariate regression

This code performs multivariate regression using Tensorflow and keras on the advent of Parkinson disease through sound recordings see Parkinson Speech Dataset with Multiple Types of Sound Recordings Data Set. The clinician’s motorUPDRS score has to be predicted from the set of features.

Read the data

# Download the Parkinson's data from UCI Machine Learning repository
dataset <- read.csv("https://archive.ics.uci.edu/ml/machine-learning-databases/parkinsons/telemonitoring/parkinsons_updrs.data")

# Set the column names
names(dataset) <- c("subject","age", "sex", "test_time","motor_UPDRS","total_UPDRS","Jitter","Jitter.Abs",
                 "Jitter.RAP","Jitter.PPQ5","Jitter.DDP","Shimmer", "Shimmer.dB", "Shimmer.APQ3",
                 "Shimmer.APQ5","Shimmer.APQ11","Shimmer.DDA", "NHR","HNR", "RPDE", "DFA","PPE")

# Remove the column 'subject' as it is not relevant to analysis
dataset1 <- subset(dataset, select = -c(subject))

# Make the column 'sex' as a factor for using dummies
dataset1$sex=as.factor(dataset1$sex)
# Add dummy variables for categorical cariable 'sex'
dataset2 <- dummy.data.frame(dataset1, sep = ".")
## Warning in model.matrix.default(~x - 1, model.frame(~x - 1), contrasts =
## FALSE): non-list contrasts argument ignored
dataset3 <- na.omit(dataset2)

Split the data as training and test in 80/20

## Split data 80% training and 20% test
sample_size <- floor(0.8 * nrow(dataset3))

## set the seed to make your partition reproducible
set.seed(12)
train_index <- sample(seq_len(nrow(dataset3)), size = sample_size)

train_dataset <- dataset3[train_index, ]
test_dataset <- dataset3[-train_index, ]

train_data <- train_dataset %>% select(sex.0,sex.1,age, test_time,Jitter,Jitter.Abs,Jitter.PPQ5,Jitter.DDP,
                              Shimmer, Shimmer.dB,Shimmer.APQ3,Shimmer.APQ11,
                              Shimmer.DDA,NHR,HNR,RPDE,DFA,PPE)

train_labels <- select(train_dataset,motor_UPDRS)
test_data <- test_dataset %>% select(sex.0,sex.1,age, test_time,Jitter,Jitter.Abs,Jitter.PPQ5,Jitter.DDP,
                              Shimmer, Shimmer.dB,Shimmer.APQ3,Shimmer.APQ11,
                              Shimmer.DDA,NHR,HNR,RPDE,DFA,PPE)
test_labels <- select(test_dataset,motor_UPDRS)

Normalize the data

 # Normalize the data by subtracting the mean and dividing by the standard deviation
normalize<-function(x) {
  y<-(x - mean(x)) / sd(x)
  return(y)
}

normalized_train_data <-apply(train_data,2,normalize)
# Convert to matrix
train_labels <- as.matrix(train_labels)
normalized_test_data <- apply(test_data,2,normalize)
test_labels <- as.matrix(test_labels)

Create the Deep Learning Model

model <- keras_model_sequential()
model %>% 
  layer_dense(units = 6, activation = 'relu', input_shape = dim(normalized_train_data)[2]) %>% 
  layer_dense(units = 9, activation = 'relu') %>%
  layer_dense(units = 6, activation = 'relu') %>%
  layer_dense(units = 1)

# Set the metrics required to be Mean Absolute Error and Mean Squared Error.For regression, the loss is 
# mean_squared_error
model %>% compile(
  loss = 'mean_squared_error',
  optimizer = optimizer_rmsprop(),
  metrics = c('mean_absolute_error','mean_squared_error')
)

# Fit the model
# Use the test data for validation
history <- model %>% fit(
  normalized_train_data, train_labels, 
  epochs = 30, batch_size = 128, 
  validation_data = list(normalized_test_data,test_labels)
)

Plot mean squared error, mean absolute error and loss for training data and test data

plot(history)

Fig1

2. Binary classification in Tensorflow – Python

This is a simple binary classification problem from UCI Machine Learning repository and deals with data on Breast cancer from the Univ. of Wisconsin Breast Cancer Wisconsin (Diagnostic) Data Set bold text

In [31]:
import tensorflow as tf
from tensorflow import keras
import pandas as pd
# Read the data set from UCI ML site
dataset_path = keras.utils.get_file("breast-cancer-wisconsin.data", "https://archive.ics.uci.edu/ml/machine-learning-databases/breast-cancer-wisconsin/breast-cancer-wisconsin.data")
raw_dataset = pd.read_csv(dataset_path, sep=",", na_values = "?", skipinitialspace=True,)
dataset = raw_dataset.copy()

#Check for Null and drop
dataset.isna().sum()
dataset = dataset.dropna()
dataset.isna().sum()

# Set the column names
dataset.columns = ["id","thickness",	"cellsize",	"cellshape","adhesion","epicellsize",
                    "barenuclei","chromatin","normalnucleoli","mitoses","class"]
dataset.head()
Downloading data from https://archive.ics.uci.edu/ml/machine-learning-databases/breast-cancer-wisconsin/breast-cancer-wisconsin.data
24576/19889 [=====================================] - 0s 1us/step
id	thickness	cellsize	cellshape	adhesion	epicellsize	barenuclei	chromatin	normalnucleoli	mitoses	class
0	1002945	5	4	4	5	7	10.0	3	2	1	2
1	1015425	3	1	1	1	2	2.0	3	1	1	2
2	1016277	6	8	8	1	3	4.0	3	7	1	2
3	1017023	4	1	1	3	2	1.0	3	1	1	2
4	1017122	8	10	10	8	7	10.0	9	7	1	4
# Create a training/test set in the ratio 80/20
train_dataset = dataset.sample(frac=0.8,random_state=0)
test_dataset = dataset.drop(train_dataset.index)

# Set the training and test set
train_dataset1= train_dataset[['thickness','cellsize','cellshape','adhesion',
                'epicellsize', 'barenuclei', 'chromatin', 'normalnucleoli','mitoses']]
test_dataset1=test_dataset[['thickness','cellsize','cellshape','adhesion',
                'epicellsize', 'barenuclei', 'chromatin', 'normalnucleoli','mitoses']]
In [34]:
# Generate the stats for each column to be used for normalization
train_stats = train_dataset1.describe()
train_stats = train_stats.transpose()
train_stats
Out[34]:
count mean std min 25% 50% 75% max
thickness 546.0 4.430403 2.812768 1.0 2.0 4.0 6.0 10.0
cellsize 546.0 3.179487 3.083668 1.0 1.0 1.0 5.0 10.0
cellshape 546.0 3.225275 3.005588 1.0 1.0 1.0 5.0 10.0
adhesion 546.0 2.921245 2.937144 1.0 1.0 1.0 4.0 10.0
epicellsize 546.0 3.261905 2.252643 1.0 2.0 2.0 4.0 10.0
barenuclei 546.0 3.560440 3.651946 1.0 1.0 1.0 7.0 10.0
chromatin 546.0 3.483516 2.492687 1.0 2.0 3.0 5.0 10.0
normalnucleoli 546.0 2.875458 3.064305 1.0 1.0 1.0 4.0 10.0
mitoses 546.0 1.609890 1.736762 1.0 1.0 1.0 1.0 10.0
In [0]:
# Create target variables
train_labels = train_dataset.pop('class')
test_labels = test_dataset.pop('class')
In [0]:
# Set the target variables as 0 or 1
train_labels[train_labels==2] =0 # benign
train_labels[train_labels==4] =1 # malignant

test_labels[test_labels==2] =0 # benign
test_labels[test_labels==4] =1 # malignant
In [0]:
# Normalize by subtracting mean and dividing by standard deviation
def normalize(x):
  return (x - train_stats['mean']) / train_stats['std']

# Convert columns to numeric
train_dataset1 = train_dataset1.apply(pd.to_numeric)
test_dataset1 = test_dataset1.apply(pd.to_numeric)

# Normalize
normalized_train_data = normalize(train_dataset1)
normalized_test_data = normalize(test_dataset1)
In [0]:
# Create a model
model = tf.keras.Sequential([
    keras.layers.Dense(6, activation=tf.nn.relu, input_shape=[len(train_dataset1.keys())]),
    keras.layers.Dense(9, activation=tf.nn.relu),
    keras.layers.Dense(6,activation=tf.nn.relu),
    keras.layers.Dense(1)
  ])

# Use the RMSProp optimizer
optimizer = tf.keras.optimizers.RMSprop(0.01)

# Since this is binary classification use binary_crossentropy
model.compile(loss='binary_crossentropy',
                optimizer=optimizer,
                metrics=['acc'])


# Fit a model
history=model.fit(
  normalized_train_data, train_labels,
  epochs=1000, validation_data=(normalized_test_data,test_labels), verbose=0)
In [55]:
hist = pd.DataFrame(history.history)
hist['epoch'] = history.epoch
hist.tail()
loss acc val_loss val_acc epoch
995 0.112499 0.992674 0.454739 0.970588 995
996 0.112499 0.992674 0.454739 0.970588 996
997 0.112499 0.992674 0.454739 0.970588 997
998 0.112499 0.992674 0.454739 0.970588 998
999 0.112499 0.992674 0.454739 0.970588 999
In [58]:
# Plot training and test accuracy 
plt.plot(history.history['acc'])
plt.plot(history.history['val_acc'])
plt.title('model accuracy')
plt.ylabel('accuracy')
plt.xlabel('epoch')
plt.legend(['train', 'test'], loc='upper left')
plt.ylim([0.9,1])
plt.show()












# Plot training and test loss
plt.plot(history.history['loss'])
plt.plot(history.history['val_loss'])
plt.title('model loss')
plt.ylabel('loss')
plt.xlabel('epoch')
plt.legend(['train', 'test'], loc='upper left')
plt.ylim([0,0.5])
plt.show()


2a. Binary classification in Tensorflow -R

This is a simple binary classification problem from UCI Machine Learning repository and deals with data on Breast cancer from the Univ. of Wisconsin Breast Cancer Wisconsin (Diagnostic) Data Set

# Read the data for Breast cancer (Wisconsin)
dataset <- read.csv("https://archive.ics.uci.edu/ml/machine-learning-databases/breast-cancer-wisconsin/breast-cancer-wisconsin.data")

# Rename the columns
names(dataset) <- c("id","thickness",   "cellsize", "cellshape","adhesion","epicellsize",
                    "barenuclei","chromatin","normalnucleoli","mitoses","class")

# Remove the columns id and class
dataset1 <- subset(dataset, select = -c(id, class))
dataset2 <- na.omit(dataset1)

# Convert the column to numeric
dataset2$barenuclei <- as.numeric(dataset2$barenuclei)

Normalize the data

train_data <-apply(dataset2,2,normalize)
train_labels <- as.matrix(select(dataset,class))

# Set the target variables as 0 or 1 as it binary classification
train_labels[train_labels==2,]=0
train_labels[train_labels==4,]=1

Create the Deep Learning model

model <- keras_model_sequential()
model %>% 
  layer_dense(units = 6, activation = 'relu', input_shape = dim(train_data)[2]) %>% 
  layer_dense(units = 9, activation = 'relu') %>%
  layer_dense(units = 6, activation = 'relu') %>%
  layer_dense(units = 1)

# Since this is a binary classification we use binary cross entropy
model %>% compile(
  loss = 'binary_crossentropy',
  optimizer = optimizer_rmsprop(),
  metrics = c('accuracy')  # Metrics is accuracy
)

Fit the model. Use 20% of data for validation

history <- model %>% fit(
  train_data, train_labels, 
  epochs = 30, batch_size = 128, 
  validation_split = 0.2
)

Plot the accuracy and loss for training and validation data

plot(history)

3. MNIST in Tensorflow – Python

This takes the famous MNIST handwritten digits . It ca be seen that Tensorflow and Keras make short work of this famous problem of the late 1980s

# Download MNIST data
mnist=tf.keras.datasets.mnist
# Set training and test data and labels
(training_images,training_labels),(test_images,test_labels)=mnist.load_data()

print(training_images.shape)
print(test_images.shape)
(60000, 28, 28)
(10000, 28, 28)
In [61]:
# Plot a sample image from MNIST and show contents
import matplotlib.pyplot as plt
plt.imshow(training_images[1])
print(training_images[1])
[[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51 159 253
159 50 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48 238 252 252
252 237 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 0 0 54 227 253 252 239
233 252 57 6 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 10 60 224 252 253 252 202
84 252 253 122 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 163 252 252 252 253 252 252
96 189 253 167 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 51 238 253 253 190 114 253 228
47 79 255 168 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 48 238 252 252 179 12 75 121 21
0 0 253 243 50 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 38 165 253 233 208 84 0 0 0 0
0 0 253 252 165 0 0 0 0 0]
[ 0 0 0 0 0 0 0 7 178 252 240 71 19 28 0 0 0 0
0 0 253 252 195 0 0 0 0 0]
[ 0 0 0 0 0 0 0 57 252 252 63 0 0 0 0 0 0 0
0 0 253 252 195 0 0 0 0 0]
[ 0 0 0 0 0 0 0 198 253 190 0 0 0 0 0 0 0 0
0 0 255 253 196 0 0 0 0 0]
[ 0 0 0 0 0 0 76 246 252 112 0 0 0 0 0 0 0 0
0 0 253 252 148 0 0 0 0 0]
[ 0 0 0 0 0 0 85 252 230 25 0 0 0 0 0 0 0 0
7 135 253 186 12 0 0 0 0 0]
[ 0 0 0 0 0 0 85 252 223 0 0 0 0 0 0 0 0 7
131 252 225 71 0 0 0 0 0 0]
[ 0 0 0 0 0 0 85 252 145 0 0 0 0 0 0 0 48 165
252 173 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 86 253 225 0 0 0 0 0 0 114 238 253
162 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 85 252 249 146 48 29 85 178 225 253 223 167
56 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 85 252 252 252 229 215 252 252 252 196 130 0
0 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 28 199 252 252 253 252 252 233 145 0 0 0
0 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 25 128 252 253 252 141 37 0 0 0 0
0 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0]
[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0]]


# Normalize the images by dividing by 255.0
training_images = training_images/255.0
test_images = test_images/255.0

# Create a Sequential Keras model
model = tf.keras.models.Sequential([tf.keras.layers.Flatten(),
                                   tf.keras.layers.Dense(1024,activation=tf.nn.relu),
                                   tf.keras.layers.Dense(10,activation=tf.nn.softmax)])
model.compile(optimizer='adam',loss='sparse_categorical_crossentropy',metrics=['accuracy'])
In [68]:
history=model.fit(training_images,training_labels,validation_data=(test_images, test_labels), epochs=5, verbose=1)
Train on 60000 samples, validate on 10000 samples
Epoch 1/5
60000/60000 [==============================] - 17s 291us/sample - loss: 0.0020 - acc: 0.9999 - val_loss: 0.0719 - val_acc: 0.9810
Epoch 2/5
60000/60000 [==============================] - 17s 284us/sample - loss: 0.0021 - acc: 0.9998 - val_loss: 0.0705 - val_acc: 0.9821
Epoch 3/5
60000/60000 [==============================] - 17s 286us/sample - loss: 0.0017 - acc: 0.9999 - val_loss: 0.0729 - val_acc: 0.9805
Epoch 4/5
60000/60000 [==============================] - 17s 284us/sample - loss: 0.0014 - acc: 0.9999 - val_loss: 0.0762 - val_acc: 0.9804
Epoch 5/5
60000/60000 [==============================] - 17s 280us/sample - loss: 0.0015 - acc: 0.9999 - val_loss: 0.0735 - val_acc: 0.9812

Fig 1

Fig 2

 

 

 

 

 

 

 

 

MNIST in Tensorflow – R

The following code uses Tensorflow to learn MNIST’s handwritten digits ### Load MNIST data

mnist <- dataset_mnist()
x_train <- mnist$train$x
y_train <- mnist$train$y
x_test <- mnist$test$x
y_test <- mnist$test$y

Reshape and rescale

# Reshape the array
x_train <- array_reshape(x_train, c(nrow(x_train), 784))
x_test <- array_reshape(x_test, c(nrow(x_test), 784))
# Rescale
x_train <- x_train / 255
x_test <- x_test / 255

Convert out put to One Hot encoded format

y_train <- to_categorical(y_train, 10)
y_test <- to_categorical(y_test, 10)

Fit the model

Use the softmax activation for recognizing 10 digits and categorical cross entropy for loss

model <- keras_model_sequential() 
model %>% 
  layer_dense(units = 256, activation = 'relu', input_shape = c(784)) %>% 
  layer_dense(units = 128, activation = 'relu') %>%
  layer_dense(units = 10, activation = 'softmax') # Use softmax

model %>% compile(
  loss = 'categorical_crossentropy',
  optimizer = optimizer_rmsprop(),
  metrics = c('accuracy')
)

Fit the model

Note: A smaller number of epochs has been used. For better performance increase number of epochs

history <- model %>% fit(
  x_train, y_train, 
  epochs = 5, batch_size = 128, 
  validation_data = list(x_test,y_test)
)

Cricketr learns new tricks : Performs fine-grained analysis of players

“He felt that his whole life was some kind of dream and he sometimes wondered whose it was and whether they were enjoying it.”

“The ships hung in the sky in much the same way that bricks don’t.”

“We demand rigidly defined areas of doubt and uncertainty!”

“For a moment, nothing happened. Then, after a second or so, nothing continued to happen.”

“The Answer to the Great Question… Of Life, the Universe and Everything… Is… Forty-two,’ said Deep Thought, with infinite majesty and calm.”

                 The Hitchhiker's Guide to the Galaxy - Douglas Adams

Introduction

In this post, I introduce 2 new functions in my R package ‘cricketr’ (cricketr v0.22) see Re-introducing cricketr! : An R package to analyze performances of cricketers which enable granular analysis of batsmen and bowlers. They are

  1. Step 1: getPlayerDataHA – This function is a wrapper around getPlayerData(), getPlayerDataOD() and getPlayerDataTT(), and adds an extra column ‘homeOrAway’ which says whether the match was played at home/away/neutral venues. A CSV file is created with this new column.
  2. Setp 2: getPlayerDataOppnHA – This function allows you to slice & dice the data for batsmen and bowlers against specific oppositions, at home/away/neutral venues and between certain periods. This reduced subset of data can be used to perform analyses. A CSV file is created as an output based on the parameters of opposition, home or away and the interval of time

Note All the existing cricketr functions can be used on this smaller fine-grained data set for a closer analysis of players

Note 1: You have to call the above functions only once. You can reuse the CSV files in other functions

Important note: Don’t go too fine-grained by choosing just one opposition, in one of home/away/neutral and for too short a period. Too small a dataset may defeat the purpose of the analysis!

This post has been published in Rpubs and can be accessed at Cricketr learns new tricks

You can download a PDF version of this post at Cricketr learns new tricks

If you are passionate about cricket, and love analyzing cricket performances, then check out my racy book on cricket ‘Cricket analytics with cricketr and cricpy – Analytics harmony with R & Python’! This book discusses and shows how to use my R package ‘cricketr’ and my Python package ‘cricpy’ to analyze batsmen and bowlers in all formats of the game (Test, ODI and T20). The paperback is available on Amazon at $21.99 and  the kindle version at $9.99/Rs 449/-. A must read for any cricket lover! Check it out!!

Untitled

1. Analyzing Tendulkar at 3 different stages of his career

The following functions analyze Sachin Tendulkar during 3 different periods of his illustrious career. a) 1st Jan 2001-1st Jan 2002 b) 1st Jan 2005-1st Jan 2006 c) 1st Jan 2012-1st Jan 2013

# Get the homeOrAway dataset for Tendulkar in matches
#Note: I have commented the lines to getPlayerDataHA() as I already have 
# CSV file
#df=getPlayerDataHA(35320,tfile="tendulkarTestHA.csv",matchType="Test")

# Get Tendulkar's data for 2001-02
df1=getPlayerDataOppnHA(infile="tendulkarHA.csv",outfile="tendulkarTest2001.csv",
                         startDate="2001-01-01",endDate="2002-01-01")

# Get Tendulkar's data for 2005-06
df2=getPlayerDataOppnHA(infile="tendulkarHA.csv",outfile="tendulkarTest2005.csv",

                                               startDate="2005-01-01",endDate="2006-01-01")

# Get Tendulkar's data for 20012-13
#df3=getPlayerDataOppnHA(infile="tendulkarHA.csv",outfile="tendulkarTest2012.csv",
#                        startDate="2012-01-01",endDate="2013-01-01")

`

1a Mean strike rate of Tendulkar in 2001,2005,2012

Note: Any of the cricketr R functions can be used on the fine-grained subset of data as below. The mean strike rate of Tendulkar is of the order of 60+ in 2001 which decreases to 50 and later to around 45

# Compute and plot mean strike rate of Tendulkar in the 3 periods
batsmanMeanStrikeRate ("./tendulkarTest2001.csv","Tendulkar-2001")

batsmanMeanStrikeRate ("./tendulkarTest2005.csv","Tendulkar-2005")

batsmanMeanStrikeRate ("./tendulkarTest2012.csv","Tendulkar-2012")

1b. Plot the performance of Tendulkar at venues during 2001,2005,2012

On an average Tendulkar score 60+ in 2001 and is really blazing. This performance decreases in 2005 and later in 2012

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
batsmanAvgRunsGround("tendulkarTest2001.csv","Tendulkar-2001")
batsmanAvgRunsGround("tendulkarTest2005.csv","Tendulkar-2005")
batsmanAvgRunsGround("tendulkarTest2012.csv","Tendulkar-2012")

dev.off()

 

 

1c. Plot the performance of Tendulkar against different oppositions during 2001,2005,2012

Sachin uniformly scores 50+ against formidable oppositions in 2001. In 2005 this decreases to 40 in 2005 and in 2012 it is around 25

batsmanAvgRunsOpposition("tendulkarTest2001.csv","Tendulkar-2001")
batsmanAvgRunsOpposition("tendulkarTest2005.csv","Tendulkar-2005")

batsmanAvgRunsOpposition("tendulkarTest2012.csv","Tendulkar-2012")

1d. Plot the relative cumulative average and relative strike rate of Tendulkar in 2001,2005,2012

The plot below compares Tendulkar’s cumulative strike rate and cumulative average during 3 different stages of his career

  1. The cumulative average runs of Tendulkar is in the high 60+ in 2001, which drops to ~50 in 2005 and later plummets to the low 25s in 2012
  2. The strike rate in 2001 for Tendulkar is amazing 60+
frames=list("tendulkarTest2001.csv","tendulkarTest2005.csv","tendulkarTest2012.csv")
names=list("Tendulkar-2001","Tendulkar-2005","Tendulkar-2012")
relativeBatsmanCumulativeAvgRuns(frames,names)

relativeBatsmanCumulativeStrikeRate(frames,names)

2. Analyzing Virat Kohli’s performance against England in England in 2014 and 2018

The analysis below looks at Kohli’s performance against England in ‘away’ venues (England) in 2014 and 2018

# Get the homeOrAway data for Kohli in Test matches
#df=getPlayerDataHA(253802,tfile="kohliTestHA.csv",type="batting",matchType="Test")

# Get the subset if data of Kohli's performance against England in England in 2014
df=getPlayerDataOppnHA(infile="kohliTestHA.csv",outfile="kohliTestEng2014.csv",
   opposition=c("England"),homeOrAway=c("away"),startDate="2014-01-01",endDate="2015-01-01")

# Get the subset if data of Kohli's performance against England in England in 2018
df1=getPlayerDataOppnHA(infile="kohliHA.csv",outfile="kohliTestEng2018.csv",
   opposition=c("England"),homeOrAway=c("away"),startDate="2018-01-01",endDate="2019-01-01")

2a. Kohli’s performance at England grounds in 2014 & 2018

Kohli had a miserable outing to England in 2014 with a string of low scores. In 2018 Kohli pulls himself out of the morass

batsmanAvgRunsGround("kohliTestEng2014.csv","Kohli-Eng-2014")

batsmanAvgRunsGround("kohliTestEng2018.csv","Kohli-Eng-2018")

2a. Kohli’s cumulative average runs in 2014 & 2018

Kohli’s cumulative average runs in 2014 is in the low 15s, while in 2018 it is 70+. Kohli stamps his class back again and undoes the bad memories of 2014

batsmanCumulativeAverageRuns("kohliTestEng2014.csv", "Kohli-Eng-2014")

batsmanCumulativeAverageRuns("kohliTestEng2018.csv", "Kohli-Eng-2018")

3a. Compare the performances of Ganguly, Dravid and VVS Laxman against opposition in ‘away’ matches in Tests

The analyses below compares the performances of Sourav Ganguly, Rahul Dravid and VVS Laxman against Australia, South Africa, and England in ‘away’ venues between 01 Jan 2002 to 01 Jan 2008

#Get the HA data for Ganguly, Dravid and Laxman
#df=getPlayerDataHA(28779,tfile="gangulyTestHA.csv",type="batting",matchType="Test")
#df=getPlayerDataHA(28114,tfile="dravidTestHA.csv",type="batting",matchType="Test")
#df=getPlayerDataHA(30750,tfile="laxmanTestHA.csv",type="batting",matchType="Test")


# Slice the data 
df=getPlayerDataOppnHA(infile="gangulyTestHA.csv",outfile="gangulyTestAES2002-08.csv"
                       ,opposition=c("Australia", "England", "South Africa"),
                       homeOrAway=c("away"),startDate="2002-01-01",endDate="2008-01-01")


df=getPlayerDataOppnHA(infile="dravidTestHA.csv",outfile="dravidTestAES2002-08.csv"
                       ,opposition=c("Australia", "England", "South Africa"),
                       homeOrAway=c("away"),startDate="2002-01-01",endDate="2008-01-01")


df=getPlayerDataOppnHA(infile="laxmanTestHA.csv",outfile="laxmanTestAES2002-08.csv"
                       ,opposition=c("Australia", "England", "South Africa"),
                       homeOrAway=c("away"),startDate="2002-01-01",endDate="2008-01-01")

3b Plot the relative cumulative average runs and relative cumative strike rate

Plot the relative cumulative average runs and relative cumative strike rate of Ganguly, Dravid and Laxman

-Dravid towers over Laxman and Ganguly with respect to cumulative average runs. – Ganguly has a superior strike rate followed by Laxman and then Dravid

frames=list("gangulyTestAES2002-08.csv","dravidTestAES2002-08.csv","laxmanTestAES2002-08.csv")
names=list("GangulyAusEngSA2002-08","DravidAusEngSA2002-08","LaxmanAusEngSA2002-08")
relativeBatsmanCumulativeAvgRuns(frames,names)

relativeBatsmanCumulativeStrikeRate(frames,names)

4. Compare the ODI performances of Rohit Sharma, Joe Root and Kane Williamson against opposition

Compare the performances of Rohit Sharma, Joe Root and Kane williamson in away & neutral venues against Australia, West Indies and Soouth Africa

  • Joe Root piles us the runs in about 15 matches. Rohit has played far more ODIs than the other two and averages a steady 35+
# Get the ODI HA data for Rohit, Root and Williamson
#df=getPlayerDataHA(34102,tfile="rohitODIHA.csv",type="batting",matchType="ODI")
#df=getPlayerDataHA(303669,tfile="joerootODIHA.csv",type="batting",matchType="ODI")
#df=getPlayerDataHA(277906,tfile="williamsonODIHA.csv",type="batting",matchType="ODI")

# Subset the data for specific opposition in away and neutral venues
df=getPlayerDataOppnHA(infile="rohitODIHA.csv",outfile="rohitODIAusWISA.csv"
                       ,opposition=c("Australia", "West Indies", "South Africa"),
                      homeOrAway=c("away","neutral"))

df=getPlayerDataOppnHA(infile="joerootODIHA.csv",outfile="joerootODIAusWISA.csv"
                       ,opposition=c("Australia", "West Indies", "South Africa"),
                       homeOrAway=c("away","neutral"))

df=getPlayerDataOppnHA(infile="williamsonODIHA.csv",outfile="williamsonODIAusWiSA.csv"
                       ,opposition=c("Australia", "West Indies", "South Africa"),
                       homeOrAway=c("away","neutral"))

4a. Compare cumulative strike rates and cumulative average runs of Rohit, Root and Williamson

The relative cumulative strike rate of all 3 are comparable

frames=list("rohitODIAusWISA.csv","joerootODIAusWISA.csv","williamsonODIAusWiSA.csv")
names=list("Rohit-ODI-AusWISA","Joe Root-ODI-AusWISA","Williamson-ODI-AusWISA")
relativeBatsmanCumulativeAvgRuns(frames,names)

relativeBatsmanCumulativeStrikeRate(frames,names)

5. Plot the performance of Dhoni in T20s against specific opposition at all venues

Plot the performances of Dhoni against Australia, West Indies, South Africa and England

# Get the HA T20 data for Dhoni
#df=getPlayerDataHA(28081,tfile="dhoniT20HA.csv",type="batting",matchType="T20")

#Subset the data
df=getPlayerDataOppnHA(infile="dhoniT20HA.csv",outfile="dhoniT20AusWISAEng.csv"
                       ,opposition=c("Australia", "West Indies", "South Africa","England"),
                       homeOrAway=c("all"))

5a. Plot Dhoni’s performances in T20

Note You can use any of cricketr’s functions against the fine grained data

batsmanAvgRunsOpposition("dhoniT20AusWISAEng.csv","Dhoni")

batsmanAvgRunsGround("dhoniT20AusWISAEng.csv","Dhoni")

batsmanCumulativeStrikeRate("dhoniT20AusWISAEng.csv","Dhoni")

batsmanCumulativeAverageRuns("dhoniT20AusWISAEng.csv","Dhoni")

6. Compute and performances of Anil Kumble, Muralitharan and Warne in ‘away’ test matches

Compute the performances of Kumble, Warne and Maralitharan against New Zealand, West Indies, South Africa and England in pitches that are not ‘home’ pithes

# Get the bowling data for Kumble, Warne and Muralitharan in Test matches
#df=getPlayerDataHA(30176,tfile="kumbleTestHA.csv",type="bowling",matchType="Test")
#df=getPlayerDataHA(8166,tfile="warneTestHA.csv",type="bowling",matchType="Test")
#df=getPlayerDataHA(49636,tfile="muraliTestHA.csv",type="bowling",matchType="Test")


# Subset the data
df=getPlayerDataOppnHA(infile="kumbleTestHA.csv",outfile="kumbleTest-NZWISAEng.csv"
                       ,opposition=c("New Zealand", "West Indies", "South Africa","England"),
                       homeOrAway=c("away"))

df=getPlayerDataOppnHA(infile="warneTestHA.csv",outfile="warneTest-NZWISAEng.csv"
                       ,opposition=c("New Zealand", "West Indies", "South Africa","England"),
                       homeOrAway=c("away"))

df=getPlayerDataOppnHA(infile="muraliTestHA.csv",outfile="muraliTest-NZWISAEng.csv"
                       ,opposition=c("New Zealand", "West Indies", "South Africa","England"),
                       homeOrAway=c("away"))

6a. Plot the average wickets of Kumble, Warne and Murali

bowlerAvgWktsOpposition("kumbleTest-NZWISAEng.csv","Kumble-NZWISAEng-AN")

bowlerAvgWktsOpposition("warneTest-NZWISAEng.csv","Warne-NZWISAEng-AN")

bowlerAvgWktsOpposition("muraliTest-NZWISAEng.csv","Murali-NZWISAEng-AN")

6b. Plot the average wickets in different grounds of Kumble, Warne and Murali

bowlerAvgWktsGround("kumbleTest-NZWISAEng.csv","Kumblew")

bowlerAvgWktsGround("warneTest-NZWISAEng.csv","Warne")

bowlerAvgWktsGround("muraliTest-NZWISAEng.csv","murali")

6c. Plot the cumulative average wickets and cumulative economy rate of Kumble, Warne and Murali

  • Murali has the best economy rate followed by Kumble and then Warne
  • Again Murali has the best cumulative average wickets followed by Warne and then Kumble
frames=list("kumbleTest-NZWISAEng.csv","warneTest-NZWISAEng.csv","muraliTest-NZWISAEng.csv")
names=list("Kumble","Warne","Murali")
relativeBowlerCumulativeAvgEconRate(frames,names)

relativeBowlerCumulativeAvgWickets(frames,names)

7. Compute and plot the performances of Bumrah in 2016, 2017 and 2018 in ODIs

# Get the HA data for Bumrah in ODI in bowling
df=getPlayerDataHA(625383,tfile="bumrahODIHA.csv",type="bowling",matchType="ODI")
## [1] "Working..."
# Slice the data for periods 2016, 2017 and 2018
df=getPlayerDataOppnHA(infile="bumrahODIHA.csv",outfile="bumrahODI2016.csv",
                       startDate="2016-01-01",endDate="2017-01-01")

df=getPlayerDataOppnHA(infile="bumrahODIHA.csv",outfile="bumrahODI2017.csv",
                       startDate="2017-01-01",endDate="2018-01-01")

df=getPlayerDataOppnHA(infile="bumrahODIHA.csv",outfile="bumrahODI2018.csv",
                       startDate="2018-01-01",endDate="2019-01-01")

7a. Compute the performances of Bumrah in 2016, 2017 and 2018

  • Very clearly Bumrah is getting better at his art. His economy rate in 2018 is the best!!!
  • Bumrah has had a very prolific year in 2017. However all the years he seems to be quite effective
frames=list("bumrahODI2016.csv","bumrahODI2017.csv","bumrahODI2018.csv")
names=list("Bumrah-2016","Bumrah-2017","Bumrah-2018")
relativeBowlerCumulativeAvgEconRate(frames,names)

relativeBowlerCumulativeAvgWickets(frames,names)

8. Compute and plot the performances of Shakib, Bumrah and Jadeja in T20 matches for bowling

# Get the HA bowling data for Shakib, Bumrah and Jadeja
df=getPlayerDataHA(56143,tfile="shakibT20HA.csv",type="bowling",matchType="T20")
## [1] "Working..."
df=getPlayerDataHA(625383,tfile="bumrahT20HA.csv",type="bowling",matchType="T20")
## [1] "Working..."
df=getPlayerDataHA(234675,tfile="jadejaT20HA.csv",type="bowling",matchType="T20")
## [1] "Working..."
# Slice the data for performances against Sri Lanka, Australia, South Africa and England
df=getPlayerDataOppnHA(infile="shakibT20HA.csv",outfile="shakibT20-SLAusSAEng.csv"
                       ,opposition=c("Sri Lanka","Australia", "South Africa","England"),
                       homeOrAway=c("all"))
df=getPlayerDataOppnHA(infile="bumrahT20HA.csv",outfile="bumrahT20-SLAusSAEng.csv"
                       ,opposition=c("Sri Lanka","Australia", "South Africa","England"),
                       homeOrAway=c("all"))

df=getPlayerDataOppnHA(infile="jadejaT20HA.csv",outfile="jadejaT20-SLAusSAEng.csv"
                       ,opposition=c("Sri Lanka","Australia", "South Africa","England"),
                       homeOrAway=c("all"))

8a. Compare the relative performances of Shakib, Bumrah and Jadeja

  • Jadeja and Bumrah have comparable economy rates. Shakib is more expensive
  • Shakib pips Bumrah in number of cumulative wickets, though Bumrah is close behind
frames=list("shakibT20-SLAusSAEng.csv","bumrahT20-SLAusSAEng.csv","jadejaT20-SLAusSAEng.csv")
names=list("Shakib-SLAusSAEng","Bumrah-SLAusSAEng","Jadeja-SLAusSAEng")
relativeBowlerCumulativeAvgEconRate(frames,names)

relativeBowlerCumulativeAvgWickets(frames,names)

Conclusion

By getting the homeOrAway data for players using the profileNo, you can slice and dice the data based on your choice of opposition, whether you want matches that were played at home/away/neutral venues. Finally by specifying the period for which the data has to be subsetted you can create fine grained analysis.

Hope you have a great time with cricketr!!!

Also see

1. My book ‘Deep Learning from first principles:Second Edition’ now on Amazon
2. Cricpy takes a swing at the ODIs
3. My book ‘Practical Machine Learning in R and Python: Third edition’ on Amazon
4. Googly: An interactive app for analyzing IPL players, matches and teams using R package yorkr
5. Big Data-2: Move into the big league:Graduate from R to SparkR
6. Rock N’ Roll with Bluemix, Cloudant & NodeExpress
7. A method to crowd source pothole marking on (Indian) roads
8. De-blurring revisited with Wiener filter using OpenCV

To see all posts click Index of posts

Analyzing cricketers’ and cricket team’s performances with cricketr template

This post includes a template which you can use for analyzing the performances of cricketers, both batsmen and bowlers in Test, ODI and Twenty 20 cricket. Additionally this template can also be used for analyzing performances of teams in Test, ODI and T20 matches using my R package cricketr. To see actual usage of functions related to players in the R package cricketr see Introducing cricketr! : An R package to analyze performances of cricketers and associated posts on cricket in Index of posts. For the analyses on team performances see https://gigadom.in/2019/06/21/cricpy-adds-team-analytics-to-its-repertoire/

The ‘cricketr’ package uses the statistics info available in ESPN Cricinfo Statsguru. The current version of this package supports all formats of the game including Test, ODI and Twenty20 versions.

You should be able to install the package from GitHub and use the many functions available in the package. Please mindful of the ESPN Cricinfo Terms of Use

Take a look at my short video tutorial on my R package cricketr on Youtube – R package cricketr – A short tutorial

Do check out my interactive Shiny app implementation using the cricketr package – Sixer – R package cricketr’s new Shiny avatar

You can download this RMarkdown file from Github at cricketr-template

The cricketr package

The cricketr package has several functions that perform several different analyses on both batsman and bowlers. The package can also analyze performances of teams The package has function that plot percentage frequency runs or wickets, runs likelihood for a batsman, relative run/strike rates of batsman and relative performance/economy rate for bowlers are available. Other interesting functions include batting performance moving average, forecast and a function to check whether the batsmans in in-form or out-of-form.

In addition performances of teams against different oppositions at different venues can be computed and plotted. The timeline of wins & losses can be plotted.

A. Performances of batsmen and bowlers

The data for a particular player can be obtained with the getPlayerData() function. To do you will need to go to ESPN CricInfo Player and type in the name of the player for e.g Ricky Ponting, Sachin Tendulkar etc. This will bring up a page which have the profile number for the player e.g. for Sachin Tendulkar this would be http://www.espncricinfo.com/india/content/player/35320.html. Hence, Sachin’s profile is 35320. This can be used to get the data for Tendulkar as shown below

The cricketr package is now available from CRAN!!! You should be able to install as below

1. Install the cricketr package

if (!require("cricketr")){
    install.packages("cricketr",lib = "c:/test")
}
library(cricketr)

The cricketr package includes some pre-packaged sample (.csv) files. You can use these sample to test functions as shown below
# Retrieve the file path of a data file installed with cricketr
#pathToFile <- system.file("data", "tendulkar.csv", package = "cricketr")
#batsman4s(pathToFile, "Sachin Tendulkar")

# The general format is pkg-function(pathToFile,par1,...)
#batsman4s(<path-To-File>,"Sachin Tendulkar")

The pre-packaged files can be accessed as shown above. To get the data of any player use the function in Test, ODI and Twenty20 use the following

2. For Test cricket

#tendulkar <- getPlayerData(35320,dir="..",file="tendulkar.csv",type="batting",homeOrAway=c(1,2), result=c(1,2,4))

2a. For ODI cricket

#tendulkarOD <- getPlayerDataOD(35320,dir="..",file="tendulkarOD.csv",type="batting")

2b For Twenty 20 cricket

#tendulkarT20 <- getPlayerDataTT(35320,dir="..",file="tendulkarT20.csv",type="batting")

Important Note 1: This needs to be done only once for a player. This function stores the player’s data in a CSV file (for e.g. tendulkar.csv as above) which can then be reused for all other functions. Once we have the data for the players many analyses can be done. This post will use the stored CSV file obtained with a prior getPlayerData for all subsequent analyses

Important Note 2: The same set of functions can be used for Tests, ODI and T20s. I have mentioned wherever you may need special functions for ODI and T20 below

Sachin Tendulkar’s performance – Basic Analyses

The 3 plots below provide the following for Tendulkar

  1. Frequency percentage of runs in each run range over the whole career
  2. Mean Strike Rate for runs scored in the given range
  3. A histogram of runs frequency percentages in runs ranges For example

3. Basic analyses

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#batsmanRunsFreqPerf("./tendulkar.csv","Tendulkar")
#batsmanMeanStrikeRate("./tendulkar.csv","Tendulkar")
#batsmanRunsRanges("./tendulkar.csv","Tendulkar")
dev.off()
## null device 
##           1
  1. Player 1
  2. Player 2
  3. Player 3
  4. Player 4

4. More analyses

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#batsman4s("./player1.csv","Player1")
#batsman6s("./player1.csv","Player1")
#batsmanMeanStrikeRate("./player1.csv","Player1")

# For ODI and T20
#batsmanScoringRateODTT("./player1.csv","Player1")
dev.off()
## null device 
##           1
par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#batsman4s("./player2.csv","Player2")
#batsman6s("./player2.csv","Player2")
#batsmanMeanStrikeRate("./player2.csv","Player2")
# For ODI and T20
#batsmanScoringRateODTT("./player1.csv","Player1")
dev.off()
## null device 
##           1
par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#batsman4s("./player3.csv","Player3")
#batsman6s("./player3.csv","Player3")
#batsmanMeanStrikeRate("./player3.csv","Player3")
# For ODI and T20
#batsmanScoringRateODTT("./player1.csv","Player1")

dev.off()
## null device 
##           1
par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#batsman4s("./player4.csv","Player4")
#batsman6s("./player4.csv","Player4")
#batsmanMeanStrikeRate("./player4.csv","Player4")
# For ODI and T20
#batsmanScoringRateODTT("./player1.csv","Player1")
dev.off()
## null device 
##           1

Note: For mean strike rate in ODI and Twenty20 use the function batsmanScoringRateODTT()

5.Boxplot histogram plot

This plot shows a combined boxplot of the Runs ranges and a histogram of the Runs Frequency

#batsmanPerfBoxHist("./player1.csv","Player1")
#batsmanPerfBoxHist("./player2.csv","Player2")
#batsmanPerfBoxHist("./player3.csv","Player3")
#batsmanPerfBoxHist("./player4.csv","Player4")

6. Contribution to won and lost matches

For the 2 functions below you will have to use the getPlayerDataSp() function. I have commented this as I already have these files. This function can only be used for Test matches

#player1sp <- getPlayerDataSp(xxxx,tdir=".",tfile="player1sp.csv",ttype="batting")
#player2sp <- getPlayerDataSp(xxxx,tdir=".",tfile="player2sp.csv",ttype="batting")
#player3sp <- getPlayerDataSp(xxxx,tdir=".",tfile="player3sp.csv",ttype="batting")
#player4sp <- getPlayerDataSp(xxxx,tdir=".",tfile="player4sp.csv",ttype="batting")
par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanContributionWonLost("player1sp.csv","Player1")
#batsmanContributionWonLost("player2sp.csv","Player2")
#batsmanContributionWonLost("player3sp.csv","Player3")
#batsmanContributionWonLost("player4sp.csv","Player4")
dev.off()
## null device 
##           1

7, Performance at home and overseas

This function also requires the use of getPlayerDataSp() as shown above. This can only be used for Test matches

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanPerfHomeAway("player1sp.csv","Player1")
#batsmanPerfHomeAway("player2sp.csv","Player2")
#batsmanPerfHomeAway("player3sp.csv","Player3")
#batsmanPerfHomeAway("player4sp.csv","Player4")
dev.off()
## null device 
##           1

8. Batsman average at different venues

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanAvgRunsGround("./player1.csv","Player1")
#batsmanAvgRunsGround("./player2.csv","Player2")
#batsmanAvgRunsGround("./player3.csv","Ponting")
#batsmanAvgRunsGround("./player4.csv","Player4")
dev.off()
## null device 
##           1

9. Batsman average against different opposition

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanAvgRunsOpposition("./player1.csv","Player1")
#batsmanAvgRunsOpposition("./player2.csv","Player2")
#batsmanAvgRunsOpposition("./player3.csv","Ponting")
#batsmanAvgRunsOpposition("./player4.csv","Player4")
dev.off()
## null device 
##           1

10. Runs Likelihood of batsman

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanRunsLikelihood("./player1.csv","Player1")
#batsmanRunsLikelihood("./player2.csv","Player2")
#batsmanRunsLikelihood("./player3.csv","Ponting")
#batsmanRunsLikelihood("./player4.csv","Player4")
dev.off()
## null device 
##           1

11. Moving Average of runs in career

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanMovingAverage("./player1.csv","Player1")
#batsmanMovingAverage("./player2.csv","Player2")
#batsmanMovingAverage("./player3.csv","Ponting")
#batsmanMovingAverage("./player4.csv","Player4")
dev.off()
## null device 
##           1

12. Cumulative Average runs of batsman in career

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanCumulativeAverageRuns("./player1.csv","Player1")
#batsmanCumulativeAverageRuns("./player2.csv","Player2")
#batsmanCumulativeAverageRuns("./player3.csv","Ponting")
#batsmanCumulativeAverageRuns("./player4.csv","Player4")
dev.off()
## null device 
##           1

13. Cumulative Average strike rate of batsman in career

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanCumulativeStrikeRate("./player1.csv","Player1")
#batsmanCumulativeStrikeRate("./player2.csv","Player2")
#batsmanCumulativeStrikeRate("./player3.csv","Ponting")
#batsmanCumulativeStrikeRate("./player4.csv","Player4")
dev.off()
## null device 
##           1

14. Future Runs forecast

Here are plots that forecast how the batsman will perform in future. In this case 90% of the career runs trend is uses as the training set. the remaining 10% is the test set.

A Holt-Winters forecating model is used to forecast future performance based on the 90% training set. The forecated runs trend is plotted. The test set is also plotted to see how close the forecast and the actual matches

Take a look at the runs forecasted for the batsman below.

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanPerfForecast("./player1.csv","Player1")
#batsmanPerfForecast("./player2.csv","Player2")
#batsmanPerfForecast("./player3.csv","Player3")
#batsmanPerfForecast("./player4.csv","Player4")
dev.off()
## null device 
##           1

15. Relative Mean Strike Rate plot

The plot below compares the Mean Strike Rate of the batsman for each of the runs ranges of 10 and plots them. The plot indicate the following

frames <- list("./player1.csv","./player2.csv","player3.csv","player4.csv")
names <- list("Player1","Player2","Player3","Player4")
#relativeBatsmanSR(frames,names)

16. Relative Runs Frequency plot

The plot below gives the relative Runs Frequency Percetages for each 10 run bucket. The plot below show

frames <- list("./player1.csv","./player2.csv","player3.csv","player4.csv")
names <- list("Player1","Player2","Player3","Player4")
#relativeRunsFreqPerf(frames,names)

17. Relative cumulative average runs in career

frames <- list("./player1.csv","./player2.csv","player3.csv","player4.csv")
names <- list("Player1","Player2","Player3","Player4")
#relativeBatsmanCumulativeAvgRuns(frames,names)

18. Relative cumulative average strike rate in career

frames <- list("./player1.csv","./player2.csv","player3.csv","player4.csv")
names <- list("Player1","Player2","Player3","player4")
#relativeBatsmanCumulativeStrikeRate(frames,names)

19. Check Batsman In-Form or Out-of-Form

The below computation uses Null Hypothesis testing and p-value to determine if the batsman is in-form or out-of-form. For this 90% of the career runs is chosen as the population and the mean computed. The last 10% is chosen to be the sample set and the sample Mean and the sample Standard Deviation are caculated.

The Null Hypothesis (H0) assumes that the batsman continues to stay in-form where the sample mean is within 95% confidence interval of population mean The Alternative (Ha) assumes that the batsman is out of form the sample mean is beyond the 95% confidence interval of the population mean.

A significance value of 0.05 is chosen and p-value us computed If p-value >= .05 – Batsman In-Form If p-value < 0.05 – Batsman Out-of-Form

Note Ideally the p-value should be done for a population that follows the Normal Distribution. But the runs population is usually left skewed. So some correction may be needed. I will revisit this later

This is done for the Top 4 batsman

#checkBatsmanInForm("./player1.csv","Player1")
#checkBatsmanInForm("./player2.csv","Player2")
#checkBatsmanInForm("./player3.csv","Player3")
#checkBatsmanInForm("./player4.csv","Player4")

20. 3D plot of Runs vs Balls Faced and Minutes at Crease

The plot is a scatter plot of Runs vs Balls faced and Minutes at Crease. A prediction plane is fitted

par(mfrow=c(1,2))
par(mar=c(4,4,2,2))
#battingPerf3d("./player1.csv","Player1")
#battingPerf3d("./player2.csv","Player2")
par(mfrow=c(1,2))
par(mar=c(4,4,2,2))
#battingPerf3d("./player3.csv","Player3")
#battingPerf3d("./player4.csv","player4")
dev.off()
## null device 
##           1

21. Predicting Runs given Balls Faced and Minutes at Crease

A multi-variate regression plane is fitted between Runs and Balls faced +Minutes at crease.

BF <- seq( 10, 400,length=15)
Mins <- seq(30,600,length=15)
newDF <- data.frame(BF,Mins)
#Player1 <- batsmanRunsPredict("./player1.csv","Player1",newdataframe=newDF)
#Player2 <- batsmanRunsPredict("./player2.csv","Player2",newdataframe=newDF)
#ponting <- batsmanRunsPredict("./player3.csv","Player3",newdataframe=newDF)
#sangakkara <- batsmanRunsPredict("./player4.csv","Player4",newdataframe=newDF)
#batsmen <-cbind(round(Player1$Runs),round(Player2$Runs),round(Player3$Runs),round(Player4$Runs))
#colnames(batsmen) <- c("Player1","Player2","Player3","Player4")
#newDF <- data.frame(round(newDF$BF),round(newDF$Mins))
#colnames(newDF) <- c("BallsFaced","MinsAtCrease")
#predictedRuns <- cbind(newDF,batsmen)
#predictedRuns

Analysis of bowlers

  1. Bowler1
  2. Bowler2
  3. Bowler3
  4. Bowler4

player1 <- getPlayerData(xxxx,dir=“..”,file=“player1.csv”,type=“bowling”) Note For One day you will have to use getPlayerDataOD() and for Twenty20 it is getPlayerDataTT()

21. Wicket Frequency Plot

This plot below computes the percentage frequency of number of wickets taken for e.g 1 wicket x%, 2 wickets y% etc and plots them as a continuous line

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerWktsFreqPercent("./bowler1.csv","Bowler1")
#bowlerWktsFreqPercent("./bowler2.csv","Bowler2")
#bowlerWktsFreqPercent("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

22. Wickets Runs plot

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerWktsRunsPlot("./bowler1.csv","Bowler1")
#bowlerWktsRunsPlot("./bowler2.csv","Bowler2")
#bowlerWktsRunsPlot("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

23. Average wickets at different venues

#bowlerAvgWktsGround("./bowler3.csv","Bowler3")

24. Average wickets against different opposition

#bowlerAvgWktsOpposition("./bowler3.csv","Bowler3")

25. Wickets taken moving average

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerMovingAverage("./bowler1.csv","Bowler1")
#bowlerMovingAverage("./bowler2.csv","Bowler2")
#bowlerMovingAverage("./bowler3.csv","Bowler3")

dev.off()
## null device 
##           1

26. Cumulative Wickets taken

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerCumulativeAvgWickets("./bowler1.csv","Bowler1")
#bowlerCumulativeAvgWickets("./bowler2.csv","Bowler2")
#bowlerCumulativeAvgWickets("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

27. Cumulative Economy rate

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerCumulativeAvgEconRate("./bowler1.csv","Bowler1")
#bowlerCumulativeAvgEconRate("./bowler2.csv","Bowler2")
#bowlerCumulativeAvgEconRate("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

28. Future Wickets forecast

Here are plots that forecast how the bowler will perform in future. In this case 90% of the career wickets trend is used as the training set. the remaining 10% is the test set.

A Holt-Winters forecating model is used to forecast future performance based on the 90% training set. The forecated wickets trend is plotted. The test set is also plotted to see how close the forecast and the actual matches

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerPerfForecast("./bowler1.csv","Bowler1")
#bowlerPerfForecast("./bowler2.csv","Bowler2")
#bowlerPerfForecast("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

29. Contribution to matches won and lost

As discussed above the next 2 charts require the use of getPlayerDataSp(). This can only be done for Test matches

#bowler1sp <- getPlayerDataSp(xxxx,tdir=".",tfile="bowler1sp.csv",ttype="bowling")
#bowler2sp <- getPlayerDataSp(xxxx,tdir=".",tfile="bowler2sp.csv",ttype="bowling")
#bowler3sp <- getPlayerDataSp(xxxx,tdir=".",tfile="bowler3sp.csv",ttype="bowling")
par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerContributionWonLost("bowler1sp","Bowler1")
#bowlerContributionWonLost("bowler2sp","Bowler2")
#bowlerContributionWonLost("bowler3sp","Bowler3")
dev.off()
## null device 
##           1

30. Performance home and overseas.

This can only be done for Test matches

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerPerfHomeAway("bowler1sp","Bowler1")
#bowlerPerfHomeAway("bowler2sp","Bowler2")
#bowlerPerfHomeAway("bowler3sp","Bowler3")
dev.off()
## null device 
##           1

31 Relative Wickets Frequency Percentage

frames <- list("./bowler1.csv","./bowler3.csv","bowler2.csv")
names <- list("Bowler1","Bowler3","Bowler2")
#relativeBowlingPerf(frames,names)

32 Relative Economy Rate against wickets taken

frames <- list("./bowler1.csv","./bowler3.csv","bowler2.csv")
names <- list("Bowler1","Bowler3","Bowler2")
#relativeBowlingER(frames,names)

33 Relative cumulative average wickets of bowlers in career

frames <- list("./bowler1.csv","./bowler3.csv","bowler2.csv")
names <- list("Bowler1","Bowler3","Bowler2")
#relativeBowlerCumulativeAvgWickets(frames,names)

34 Relative cumulative average economy rate of bowlers

frames <- list("./bowler1.csv","./bowler3.csv","bowler2.csv")
names <- list("Bowler1","Bowler3","Bowler2")
#relativeBowlerCumulativeAvgEconRate(frames,names)

35 Check for bowler in-form/out-of-form

The below computation uses Null Hypothesis testing and p-value to determine if the bowler is in-form or out-of-form. For this 90% of the career wickets is chosen as the population and the mean computed. The last 10% is chosen to be the sample set and the sample Mean and the sample Standard Deviation are caculated.

The Null Hypothesis (H0) assumes that the bowler continues to stay in-form where the sample mean is within 95% confidence interval of population mean The Alternative (Ha) assumes that the bowler is out of form the sample mean is beyond the 95% confidence interval of the population mean.

A significance value of 0.05 is chosen and p-value us computed If p-value >= .05 – Batsman In-Form If p-value < 0.05 – Batsman Out-of-Form

Note Ideally the p-value should be done for a population that follows the Normal Distribution. But the runs population is usually left skewed. So some correction may be needed. I will revisit this later

Note: The check for the form status of the bowlers indicate

#checkBowlerInForm("./bowler1.csv","Bowler1")
#checkBowlerInForm("./bowler2.csv","Bowler2")
#checkBowlerInForm("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

36. Performing granular analysis of batsmen and bowlers

To perform granular analysis of batsmen and bowlers do the following 2 steps

  1. Step 1: getPlayerDataHA – This function is a wrapper around getPlayerData(), getPlayerDataOD() and getPlayerDataTT(), and adds an extra column ‘homeOrAway’ which says whether the match was played at home/away/neutral venues. A CSV file is created with this new column.
  2. Step2:getPlayerDataOppnHA – This function allows you to slice & dice the data for batsmen and bowlers against specific oppositions, at home/away/neutral venues and between certain periods. This reduced subset of data can be used to perform analyses. A CSV file is created as an output based on the parameters of opposition, home or away and the interval of time

37. GetPlayerDataHA (Batsmen, Tests)

#This saves a file playerTestHA.csv
#df=getPlayerDataHA(<profileNo>,tfile="playerTestHA.csv",type="batting", matchType="Test")

#Use the generate file to create a subset of data
#df1=getPlayerDataOppnHA(infile="playerTestHA.csv",outfile="playerTestFile1.csv",
#                         startDate=<start Date>,endDate=<end Date>)

38. GetPlayerDataHA (Bowlers, Tests)

#This saves a file playerTestHA.csv
#df=getPlayerDataHA(<profileNo>,tfile="playerTestHA.csv",type="bowling", matchType="Test")

#Use the generate file to create a subset of data
#df1=getPlayerDataOppnHA(infile="playerTestHA.csv",outfile="playerTestFile1.csv",
#                         startDate=<start Date>,endDate=<end Date>)

39. GetPlayerDataHA (Batsmen, ODI)

#This saves a file playerTestHA.csv
#df=getPlayerDataHA(<profileNo>,tfile="playerODIHA.csv",type="batting", matchType="ODI")

#Use the generate file to create a subset of data
#df1=getPlayerDataOppnHA(infile="playerODIHA.csv",outfile="playerODIFile1.csv",
#                         startDate=<start Date>,endDate=<end Date>)

40. GetPlayerDataHA (Bowlers, ODI)

#This saves a file playerTestHA.csv
#df=getPlayerDataHA(<profileNo>,tfile="playerODIHA.csv",type="bowling", matchType="ODI")

#Use the generate file to create a subset of data
#df1=getPlayerDataOppnHA(infile="playerODIHA.csv",outfile="playerODIFile1.csv",
#                         startDate=<start Date>,endDate=<end Date>)

41. GetPlayerDataHA (Batsmen, T20)

#This saves a file playerTestHA.csv
#df=getPlayerDataHA(<profileNo>,tfile="playerT20HA.csv",type="batting", matchType="T20")

#Use the generate file to create a subset of data
#df1=getPlayerDataOppnHA(infile="playerT20HA.csv",outfile="playerT20File1.csv",
#                         startDate=<start Date>,endDate=<end Date>)

42. GetPlayerDataHA (Bowlers, T20)

#This saves a file playerTestHA.csv
#df=getPlayerDataHA(<profileNo>,tfile="playerT20HA.csv",type="bowling", matchType="T20")

#Use the generate file to create a subset of data
#df1=getPlayerDataOppnHA(infile="playerT20HA.csv",outfile="playerT20File1.csv",
#                         startDate=<start Date>,endDate=<end Date>)

Important Note Once you get the subset of data for batsmen and bowlers playerTestFile1.csv, playerODIFile1.csv or playerT20File1.csv , you can use any of the cricketr functions on the subset of data for a fine-grained analysis

B. Performances of teams

The following functions will get the team data for Tests, ODI and T20s

1a. Get Test team data

#country1Test= getTeamDataHomeAway(dir=".",teamView="bat",matchType="Test",file="country1Test.csv",save=True,teamName="Country1")
#country2Test= getTeamDataHomeAway(dir=".",teamView="bat",matchType="Test",file="country2Test.csv",save=True,teamName="Country2")
#country3Test= getTeamDataHomeAway(dir=".",teamView="bat",matchType="Test",file="country3Test.csv",save=True,teamName="Country3")

1b. Get ODI team data

#team1ODI=  getTeamDataHomeAway(dir=".",matchType="ODI",file="team1ODI.csv",save=True,teamName="team1")
#team2ODI=  getTeamDataHomeAway(dir=".",matchType="ODI",file="team2ODI.csv",save=True,teamName="team2")
#team3ODI=  getTeamDataHomeAway(dir=".",matchType="ODI",file="team3ODI.csv",save=True,teamName="team3")

1c. Get T20 team data

#team1T20 = getTeamDataHomeAway(matchType="T20",file="team1T20.csv",save=True,teamName="team1")
#team2T20 = getTeamDataHomeAway(matchType="T20",file="team2T20.csv",save=True,teamName="team2")
#team3T20 = getTeamDataHomeAway(matchType="T20",file="team3T20.csv",save=True,teamName="team3")

2a. Test – Analyzing test performances against opposition

# Get the performance of Indian test team against all teams at all venues as a dataframe
#df <- teamWinLossStatusVsOpposition("country1Test.csv",teamName="Country1",opposition=c("all"),homeOrAway=c("all"),matchType="Test",plot=FALSE)
#head(df)

# Plot the performance of Country1 Test team  against all teams at all venues
#teamWinLossStatusVsOpposition("country1Test.csv",teamName="Country1",opposition=c("all"),homeOrAway=c("all"),matchType="Test",plot=TRUE)

# Plot the performance of Country1 Test team  against specific teams at home/away venues
#teamWinLossStatusVsOpposition("country1Test.csv",teamName="Country1",opposition=c("Country2","Country3","Country4"),homeOrAway=c("home","away","neutral"),matchType="Test",plot=TRUE)

2b. Test – Analyzing test performances against opposition at different grounds

# Get the performance of Indian test team against all teams at all venues as a dataframe
#df <- teamWinLossStatusAtGrounds("country1Test.csv",teamName="Country1",opposition=c("all"),homeOrAway=c("all"),matchType="Test",plot=FALSE)
#head(df)

# Plot the performance of Country1 Test team  against all teams at all venues
#teamWinLossStatusAtGrounds("country1Test.csv",teamName="Country1",opposition=c("all"),homeOrAway=c("all"),matchType="Test",plot=TRUE)

# Plot the performance of Country1 Test team  against specific teams at home/away venues
#teamWinLossStatusAtGrounds("country1Test.csv",teamName="Country1",opposition=c("Country2","Country3","Country4"),homeOrAway=c("home","away","neutral"),matchType="Test",plot=TRUE)

2c. Test – Plot time lines of wins and losses

#plotTimelineofWinsLosses("country1Test.csv",team="Country1",opposition=c("all"), #startDate="1970-01-01",endDate="2017-01-01")
#plotTimelineofWinsLosses("country1Test.csv",team="Country1",opposition=c("Country2","Count#ry3","Country4"), homeOrAway=c("home",away","neutral"), startDate=<start Date> #,endDate=<endDate>)

3a. ODI – Analyzing test performances against opposition

#df <- teamWinLossStatusVsOpposition("team1ODI.csv",teamName="Team1",opposition=c("all"),homeOrAway=c("all"),matchType="ODI",plot=FALSE)
#head(df)

# Plot the performance of team1  in ODIs against Sri Lanka, India at all venues
#teamWinLossStatusVsOpposition("team1ODI.csv",teamName="Team1",opposition=c("all"),homeOrAway=c(all"),matchType="ODI",plot=TRUE)

# Plot the performance of Team1 ODI team  against specific teams at home/away venues
#teamWinLossStatusVsOpposition("team1ODI.csv",teamName="Team1",opposition=c("Team2","Team3","Team4"),homeOrAway=c("home","away","neutral"),matchType="ODI",plot=TRUE)

3b. ODI – Analyzing test performances against opposition at different venues

#df <- teamWinLossStatusAtGrounds("team1ODI.csv",teamName="Team1",opposition=c("all"),homeOrAway=c("all"),matchType="ODI",plot=FALSE)
#head(df)

# Plot the performance of Team1s in ODIs specific ODI teams at all venues
#teamWinLossStatusAtGrounds("team1ODI.csv",teamName="Team1",opposition=c("all"),homeOrAway=c(all"),matchType="ODI",plot=TRUE)

# Plot the performance of Team1 against specific ODI teams at home/away venues
#teamWinLossStatusAtGrounds("team1ODI.csv",teamName="Team1",opposition=c("Team2","Team3","Team4"),homeOrAway=c("home","away","neutral"),matchType="ODI",plot=TRUE)

3c. ODI – Plot time lines of wins and losses

#Plot the time line of wins/losses of Bangladesh ODI team between 2 dates all venues
#plotTimelineofWinsLosses("team1ODI.csv",team="Team1",startDate=<start date> ,endDa#te=<end date>,matchType="ODI")

#Plot the time line of wins/losses against specific opposition between 2 dates
#plotTimelineofWinsLosses("team1ODI.csv",team="Team1",opposition=c("Team2","Team2"), homeOrAway=c("home",away","neutral"), startDate=<start date>,endDate=<end date> ,matchType="ODI")

4a. T20 – Analyzing test performances against opposition

#df <- teamWinLossStatusVsOpposition("teamT20.csv",teamName="Team1",opposition=c("all"),homeOrAway=c("all"),matchType="T20",plot=FALSE)
#head(df)

# Plot the performance of Team1 in T20s  against  all opposition at all venues
#teamWinLossStatusVsOpposition("teamT20.csv",teamName="Team1",opposition=c("all"),homeOrAway=c(all"),matchType="T20",plot=TRUE)

# Plot the performance of T20 Test team  against specific teams at home/away venues
#teamWinLossStatusVsOpposition("teamT20.csv",teamName="Team1",opposition=c("Team2","Team3","Team4"),homeOrAway=c("home","away","neutral"),matchType="T20",plot=TRUE)

4b. T20 – Analyzing test performances against opposition at different venues

#df <- teamWinLossStatusAtGrounds("teamT20.csv",teamName="Team1",opposition=c("all"),homeOrAway=c("all"),matchType="T20",plot=FALSE)
#head(df)

# Plot the performance of Team1s in ODIs specific ODI teams at all venues
#teamWinLossStatusAtGrounds("teamT20.csv",teamName="Team1",opposition=c("all"),homeOrAway=c(all"),matchType="T20",plot=TRUE)

# Plot the performance of Team1 against specific ODI teams at home/away venues
#teamWinLossStatusAtGrounds("teamT20.csv",teamName="Team1",opposition=c("Team2","Team3","Team4"),homeOrAway=c("home","away","neutral"),matchType="T20",plot=TRUE)

4c. T20 – Plot time lines of wins and losses

#Plot the time line of wins/losses of Bangladesh ODI team between 2 dates all venues
#plotTimelineofWinsLosses("teamT20.csv",team="Team1",startDate=<start date> ,endDa#te=<end date>,matchType="T20")

#Plot the time line of wins/losses against specific opposition between 2 dates
#plotTimelineofWinsLosses("teamT20.csv",team="Team1",opposition=c("Team2","Team2"), homeOrAway=c("home",away","neutral"), startDate=<start date>,endDate=<end date> ,matchType="T20")

Key Findings

Analysis of batsman

Analysis of bowlers

Analysis of teams

Conclusion

Using the above template, analysis can be done for both batsmen and bowlers in Test, ODI and T20. Also analysis of any any team in Test, ODI and T20 against other specific opposition, at home/away and neutral venues can be performed.

Have fun with cricketr!!

Also see
1. Practical Machine Learning with R and Python – Part 5
2. Using Linear Programming (LP) for optimizing bowling change or batting lineup in T20 cricket
3. yorkr crashes the IPL party ! – Part 1
4. Deep Learning from first principles in Python, R and Octave – Part 6
5. Cricpy takes a swing at the ODIs
6. Bull in a china shop – Behind the scenes in Android
7. Eliminating the Performance Drag
To see all posts click Index of posts

Big Data-4: Webserver log analysis with RDDs, Pyspark, SparkR and SparklyR

“There’s something so paradoxical about pi. On the one hand, it represents order, as embodied by the shape of a circle, long held to be a symbol of perfection and eternity. On the other hand, pi is unruly, disheveled in appearance, its digits obeying no obvious rule, or at least none that we can perceive. Pi is elusive and mysterious, forever beyond reach. Its mix of order and disorder is what makes it so bewitching. ” 

From  Infinite Powers by Steven Strogatz

Anybody who wants to be “anybody” in Big Data must necessarily be able to work on both large structured and unstructured data.  Log analysis is critical in any enterprise which is usually unstructured. As I mentioned in my previous post Big Data: On RDDs, Dataframes,Hive QL with Pyspark and SparkR-Part 3 RDDs are typically used to handle unstructured data. Spark has the Dataframe abstraction over RDDs which performs better as it is optimized with the Catalyst optimization engine. Nevertheless, it is important to be able to process with RDDs.  This post is a continuation of my 3 earlier posts on Big Data namely

1. Big Data-1: Move into the big league:Graduate from Python to Pyspark
2. Big Data-2: Move into the big league:Graduate from R to SparkR
3. Big Data: On RDDs, Dataframes,Hive QL with Pyspark and SparkR-Part 3

This post uses publicly available Webserver logs from NASA. The logs are for the months Jul 95 and Aug 95 and are a good place to start unstructured text analysis/log analysis. I highly recommend parsing these publicly available logs with regular expressions. It is only when you do that the truth of Jamie Zawinski’s pearl of wisdom

“Some people, when confronted with a problem, think “I know, I’ll use regular expressions.” Now they have two problems.” – Jamie Zawinksi

hits home. I spent many hours struggling with regex!!

For this post for the RDD part,  I had to refer to Dr. Fisseha Berhane’s blog post Webserver Log Analysis and for the Pyspark part, to the Univ. of California Specialization which I had done 3 years back Big Data Analysis with Apache Spark. Once I had played around with the regex for RDDs and PySpark I managed to get SparkR and SparklyR versions to work.

The notebooks used in this post have been published and are available at

  1. logsAnalysiswithRDDs
  2. logsAnalysiswithPyspark
  3. logsAnalysiswithSparkRandSparklyR

You can also download all the notebooks from Github at WebServerLogsAnalysis

An essential and unavoidable aspect of Big Data processing is the need to process unstructured text.Web server logs are one such area which requires Big Data techniques to process massive amounts of logs. The Common Log Format also known as the NCSA Common log format, is a standardized text file format used by web servers when generating server log files. Because the format is standardized, the files can be readily analyzed.

A publicly available webserver logs is the NASA-HTTP Web server logs. This is good dataset with which we can play around to get familiar to handling web server logs. The logs can be accessed at NASA-HTTP

Description These two traces contain two month’s worth of all HTTP requests to the NASA Kennedy Space Center WWW server in Florida.

Format The logs are an ASCII file with one line per request, with the following columns:

-host making the request. A hostname when possible, otherwise the Internet address if the name could not be looked up.

-timestamp in the format “DAY MON DD HH:MM:SS YYYY”, where DAY is the day of the week, MON is the name of the month, DD is the day of the month, HH:MM:SS is the time of day using a 24-hour clock, and YYYY is the year. The timezone is -0400.

-request given in quotes.

-HTTP reply code.

-bytes in the reply.

1 Parse Web server logs with RDDs

1.1 Read NASA Web server logs

Read the logs files from NASA for the months Jul 95 and Aug 95

from pyspark import SparkContext, SparkConf
from pyspark.sql import SQLContext

conf = SparkConf().setAppName("Spark-Logs-Handling").setMaster("local[*]")
sc = SparkContext.getOrCreate(conf)

sqlcontext = SQLContext(sc)
rdd = sc.textFile("/FileStore/tables/NASA_access_log_*.gz")
rdd.count()
Out[1]: 3461613

1.2Check content

Check the logs to identify the parsing rules required for the logs

i=0
for line in rdd.sample(withReplacement = False, fraction = 0.00001, seed = 100).collect():
    i=i+1
    print(line)
    if i >5:
      break
ix-stp-fl2-19.ix.netcom.com – – [03/Aug/1995:23:03:09 -0400] “GET /images/faq.gif HTTP/1.0” 200 263
slip183-1.kw.jp.ibm.net – – [04/Aug/1995:18:42:17 -0400] “GET /shuttle/missions/sts-70/images/DSC-95EC-0001.gif HTTP/1.0” 200 107133
piweba4y.prodigy.com – – [05/Aug/1995:19:17:41 -0400] “GET /icons/menu.xbm HTTP/1.0” 200 527
ruperts.bt-sys.bt.co.uk – – [07/Aug/1995:04:44:10 -0400] “GET /shuttle/countdown/video/livevideo2.gif HTTP/1.0” 200 69067
dal06-04.ppp.iadfw.net – – [07/Aug/1995:21:10:19 -0400] “GET /images/NASA-logosmall.gif HTTP/1.0” 200 786
p15.ppp-1.directnet.com – – [10/Aug/1995:01:22:54 -0400] “GET /images/KSC-logosmall.gif HTTP/1.0” 200 1204

1.3 Write the parsing rule for each of the fields

  • host
  • timestamp
  • path
  • status
  • content_bytes

1.21 Get IP address/host name

This regex is at the start of the log and includes any non-white characted

import re
rslt=(rdd.map(lambda line: re.search('\S+',line)
   .group(0))
   .take(3)) # Get the IP address \host name
rslt
Out[3]: [‘in24.inetnebr.com’, ‘uplherc.upl.com’, ‘uplherc.upl.com’]

1.22 Get timestamp

Get the time stamp

rslt=(rdd.map(lambda line: re.search(‘(\S+ -\d{4})’,line)
    .groups())
    .take(3))  #Get the  date
rslt
[(‘[01/Aug/1995:00:00:01 -0400’,),
(‘[01/Aug/1995:00:00:07 -0400’,),
(‘[01/Aug/1995:00:00:08 -0400’,)]

1.23 HTTP request

Get the HTTP request sent to Web server \w+ {GET}

# Get the REST call with ” “
rslt=(rdd.map(lambda line: re.search('"\w+\s+([^\s]+)\s+HTTP.*"',line)
    .groups())
    .take(3)) # Get the REST call
rslt
[(‘/shuttle/missions/sts-68/news/sts-68-mcc-05.txt’,),
(‘/’,),
(‘/images/ksclogo-medium.gif’,)]

1.23Get HTTP response status

Get the HTTP response to the request

rslt=(rdd.map(lambda line: re.search('"\s(\d{3})',line)
    .groups())
    .take(3)) #Get the status
rslt
Out[6]: [(‘200’,), (‘304’,), (‘304’,)]

1.24 Get content size

Get the HTTP response in bytes

rslt=(rdd.map(lambda line: re.search(‘^.*\s(\d*)$’,line)
    .groups())
    .take(3)) # Get the content size
rslt
Out[7]: [(‘1839’,), (‘0’,), (‘0’,)]

1.24 Putting it all together

Now put all the individual pieces together into 1 big regular expression and assign to the groups

  1. Host 2. Timestamp 3. Path 4. Status 5. Content_size
rslt=(rdd.map(lambda line: re.search('^(\S+)((\s)(-))+\s(\[\S+ -\d{4}\])\s("\w+\s+([^\s]+)\s+HTTP.*")\s(\d{3}\s(\d*)$)',line)
    .groups())
    .take(3))
rslt
[(‘in24.inetnebr.com’,
‘ -‘,
‘ ‘,
‘-‘,
‘[01/Aug/1995:00:00:01 -0400]’,
‘”GET /shuttle/missions/sts-68/news/sts-68-mcc-05.txt HTTP/1.0″‘,
‘/shuttle/missions/sts-68/news/sts-68-mcc-05.txt’,
‘200 1839’,
‘1839’),
(‘uplherc.upl.com’,
‘ -‘,
‘ ‘,
‘-‘,
‘[01/Aug/1995:00:00:07 -0400]’,
‘”GET / HTTP/1.0″‘,
‘/’,
‘304 0’,
‘0’),
(‘uplherc.upl.com’,
‘ -‘,
‘ ‘,
‘-‘,
‘[01/Aug/1995:00:00:08 -0400]’,
‘”GET /images/ksclogo-medium.gif HTTP/1.0″‘,
‘/images/ksclogo-medium.gif’,
‘304 0’,
‘0’)]

1.25 Add a log parsing function

import re
def parse_log1(line):
    match = re.search('^(\S+)((\s)(-))+\s(\[\S+ -\d{4}\])\s("\w+\s+([^\s]+)\s+HTTP.*")\s(\d{3}\s(\d*)$)',line)
    if match is None:    
        return(line,0)
    else:
        return(line,1)

1.26 Check for parsing failure

Check how many lines successfully parsed with the parsing function

n_logs = rdd.count()
failed = rdd.map(lambda line: parse_log1(line)).filter(lambda line: line[1] == 0).count()
print('Out of a total of {} logs, {} failed to parse'.format(n_logs,failed))
# Get the failed records line[1] == 0
failed1=rdd.map(lambda line: parse_log1(line)).filter(lambda line: line[1]==0)
failed1.take(3)
Out of a total of 3461613 logs, 38768 failed to parse
Out[10]:
[(‘gw1.att.com – – [01/Aug/1995:00:03:53 -0400] “GET /shuttle/missions/sts-73/news HTTP/1.0” 302 -‘,
0),
(‘js002.cc.utsunomiya-u.ac.jp – – [01/Aug/1995:00:07:33 -0400] “GET /shuttle/resources/orbiters/discovery.gif HTTP/1.0” 404 -‘,
0),
(‘pipe1.nyc.pipeline.com – – [01/Aug/1995:00:12:37 -0400] “GET /history/apollo/apollo-13/apollo-13-patch-small.gif” 200 12859’,
0)]

1.26 The above rule is not enough to parse the logs

It can be seen that the single rule only parses part of the logs and we cannot group the regex separately. There is an error “AttributeError: ‘NoneType’ object has no attribute ‘group'” which shows up

#rdd.map(lambda line: re.search(‘^(\S+)((\s)(-))+\s(\[\S+ -\d{4}\])\s(“\w+\s+([^\s]+)\s+HTTP.*”)\s(\d{3}\s(\d*)$)’,line[0]).group()).take(4)

File “/databricks/spark/python/pyspark/util.py”, line 99, in wrapper
return f(*args, **kwargs)
File “<command-1348022240961444>”, line 1, in <lambda>
AttributeError: ‘NoneType’ object has no attribute ‘group’

at org.apache.spark.api.python.BasePythonRunner$ReaderIterator.handlePythonException(PythonRunner.scala:490)

1.27 Add rule for parsing failed records

One of the issues with the earlier rule is the content_size has “-” for some logs

import re
def parse_failed(line):
    match = re.search('^(\S+)((\s)(-))+\s(\[\S+ -\d{4}\])\s("\w+\s+([^\s]+)\s+HTTP.*")\s(\d{3}\s-$)',line)
    if match is None:        
        return(line,0)
    else:
        return(line,1)

1.28 Parse records which fail

Parse the records that fails with the new rule

failed2=rdd.map(lambda line: parse_failed(line)).filter(lambda line: line[1]==1)
failed2.take(5)
Out[13]:
[(‘gw1.att.com – – [01/Aug/1995:00:03:53 -0400] “GET /shuttle/missions/sts-73/news HTTP/1.0” 302 -‘,
1),
(‘js002.cc.utsunomiya-u.ac.jp – – [01/Aug/1995:00:07:33 -0400] “GET /shuttle/resources/orbiters/discovery.gif HTTP/1.0” 404 -‘,
1),
(‘tia1.eskimo.com – – [01/Aug/1995:00:28:41 -0400] “GET /pub/winvn/release.txt HTTP/1.0” 404 -‘,
1),
(‘itws.info.eng.niigata-u.ac.jp – – [01/Aug/1995:00:38:01 -0400] “GET /ksc.html/facts/about_ksc.html HTTP/1.0” 403 -‘,
1),
(‘grimnet23.idirect.com – – [01/Aug/1995:00:50:12 -0400] “GET /www/software/winvn/winvn.html HTTP/1.0” 404 -‘,
1)]

1.28 Add both rules

Add both rules for parsing the log.

Note it can be shown that even with both rules all the logs are not parse.Further rules may need to be added

import re
def parse_log2(line):
    # Parse logs with the rule below
    match = re.search('^(\S+)((\s)(-))+\s(\[\S+ -\d{4}\])\s("\w+\s+([^\s]+)\s+HTTP.*")\s(\d{3})\s(\d*)$',line)
    # If match failed then use the rule below
    if match is None:
        match = re.search('^(\S+)((\s)(-))+\s(\[\S+ -\d{4}\])\s("\w+\s+([^\s]+)\s+HTTP.*")\s(\d{3}\s-$)',line)
    if match is None:
        return (line, 0) # Return 0 for failure
    else:
        return (line, 1) # Return 1 for success

1.29 Group the different regex to groups for handling

def map2groups(line):
    match = re.search('^(\S+)((\s)(-))+\s(\[\S+ -\d{4}\])\s("\w+\s+([^\s]+)\s+HTTP.*")\s(\d{3})\s(\d*)$',line)
    if match is None:
        match = re.search('^(\S+)((\s)(-))+\s(\[\S+ -\d{4}\])\s("\w+\s+([^\s]+)\s+HTTP.*")\s(\d{3})\s(-)$',line)    
    return(match.groups())

1.30 Parse the logs and map the groups

parsed_rdd = rdd.map(lambda line: parse_log2(line)).filter(lambda line: line[1] == 1).map(lambda line : line[0])

parsed_rdd2 = parsed_rdd.map(lambda line: map2groups(line))

2. Parse Web server logs with Pyspark

2.1Read data into a Pyspark dataframe

import os
logs_file_path="/FileStore/tables/" + os.path.join('NASA_access_log_*.gz')
from pyspark.sql.functions import split, regexp_extract
base_df = sqlContext.read.text(logs_file_path)
#base_df.show(truncate=False)
from pyspark.sql.functions import split, regexp_extract
split_df = base_df.select(regexp_extract('value', r'^([^\s]+\s)', 1).alias('host'),
                          regexp_extract('value', r'^.*\[(\d\d\/\w{3}\/\d{4}:\d{2}:\d{2}:\d{2} -\d{4})]', 1).alias('timestamp'),
                          regexp_extract('value', r'^.*"\w+\s+([^\s]+)\s+HTTP.*"', 1).alias('path'),
                          regexp_extract('value', r'^.*"\s+([^\s]+)', 1).cast('integer').alias('status'),
                          regexp_extract('value', r'^.*\s+(\d+)$', 1).cast('integer').alias('content_size'))
split_df.show(5,truncate=False)
+———————+————————–+———————————————–+——+————+
|host |timestamp |path |status|content_size|
+———————+————————–+———————————————–+——+————+
|199.72.81.55 |01/Jul/1995:00:00:01 -0400|/history/apollo/ |200 |6245 |
|unicomp6.unicomp.net |01/Jul/1995:00:00:06 -0400|/shuttle/countdown/ |200 |3985 |
|199.120.110.21 |01/Jul/1995:00:00:09 -0400|/shuttle/missions/sts-73/mission-sts-73.html |200 |4085 |
|burger.letters.com |01/Jul/1995:00:00:11 -0400|/shuttle/countdown/liftoff.html |304 |0 |
|199.120.110.21 |01/Jul/1995:00:00:11 -0400|/shuttle/missions/sts-73/sts-73-patch-small.gif|200 |4179 |
+———————+————————–+———————————————–+——+————+
only showing top 5 rows

2.2 Check data

bad_rows_df = split_df.filter(split_df[‘host’].isNull() |
                              split_df['timestamp'].isNull() |
                              split_df['path'].isNull() |
                              split_df['status'].isNull() |
                             split_df['content_size'].isNull())
bad_rows_df.count()
Out[20]: 33905

2.3Check no of rows which do not have digits

We have already seen that the content_type field has ‘-‘ instead of digits in RDDs

#bad_content_size_df = base_df.filter(~ base_df[‘value’].rlike(r’\d+$’))
bad_content_size_df.count()
Out[21]: 33905

2.4 Add ‘*’ to identify bad rows

To identify the rows that are bad, concatenate ‘*’ to the content_size field where the field does not have digits. It can be seen that the content_size has ‘-‘ instead of a valid number

from pyspark.sql.functions import lit, concat
bad_content_size_df.select(concat(bad_content_size_df['value'], lit('*'))).show(4,truncate=False)
+—————————————————————————————————————————————————+
|concat(value, *) |
+—————————————————————————————————————————————————+
|dd15-062.compuserve.com – – [01/Jul/1995:00:01:12 -0400] “GET /news/sci.space.shuttle/archive/sci-space-shuttle-22-apr-1995-40.txt HTTP/1.0” 404 -*|
|dynip42.efn.org – – [01/Jul/1995:00:02:14 -0400] “GET /software HTTP/1.0” 302 -* |
|ix-or10-06.ix.netcom.com – – [01/Jul/1995:00:02:40 -0400] “GET /software/winvn HTTP/1.0” 302 -* |
|ix-or10-06.ix.netcom.com – – [01/Jul/1995:00:03:24 -0400] “GET /software HTTP/1.0” 302 -* |
+—————————————————————————————————————————————————+

2.5 Fill NAs with 0s

# Replace all null content_size values with 0.

cleaned_df = split_df.na.fill({‘content_size’: 0})

3. Webserver  logs parsing with SparkR

library(SparkR)
library(stringr)
file_location = "/FileStore/tables/NASA_access_log_Jul95.gz"
file_location = "/FileStore/tables/NASA_access_log_Aug95.gz"
# Load the SparkR library


# Initiate a SparkR session
sparkR.session()
sc <- sparkR.session()
sqlContext <- sparkRSQL.init(sc)
df <- read.text(sqlContext,"/FileStore/tables/NASA_access_log_Jul95.gz")

#df=SparkR::select(df, "value")
#head(SparkR::collect(df))
#m=regexp_extract(df$value,'\\\\S+',1)

a=df %>% 
  withColumn('host', regexp_extract(df$value, '^(\\S+)', 1)) %>%
  withColumn('timestamp', regexp_extract(df$value, "((\\S+ -\\d{4}))", 2)) %>%
  withColumn('path', regexp_extract(df$value, '(\\"\\w+\\s+([^\\s]+)\\s+HTTP.*")', 2))  %>%
  withColumn('status', regexp_extract(df$value, '(^.*"\\s+([^\\s]+))', 2)) %>%
  withColumn('content_size', regexp_extract(df$value, '(^.*\\s+(\\d+)$)', 2))
#b=a%>% select(host,timestamp,path,status,content_type)
head(SparkR::collect(a),10)

1 199.72.81.55 – – [01/Jul/1995:00:00:01 -0400] “GET /history/apollo/ HTTP/1.0” 200 6245
2 unicomp6.unicomp.net – – [01/Jul/1995:00:00:06 -0400] “GET /shuttle/countdown/ HTTP/1.0” 200 3985
3 199.120.110.21 – – [01/Jul/1995:00:00:09 -0400] “GET /shuttle/missions/sts-73/mission-sts-73.html HTTP/1.0” 200 4085
4 burger.letters.com – – [01/Jul/1995:00:00:11 -0400] “GET /shuttle/countdown/liftoff.html HTTP/1.0” 304 0
5 199.120.110.21 – – [01/Jul/1995:00:00:11 -0400] “GET /shuttle/missions/sts-73/sts-73-patch-small.gif HTTP/1.0” 200 4179
6 burger.letters.com – – [01/Jul/1995:00:00:12 -0400] “GET /images/NASA-logosmall.gif HTTP/1.0” 304 0
7 burger.letters.com – – [01/Jul/1995:00:00:12 -0400] “GET /shuttle/countdown/video/livevideo.gif HTTP/1.0” 200 0
8 205.212.115.106 – – [01/Jul/1995:00:00:12 -0400] “GET /shuttle/countdown/countdown.html HTTP/1.0” 200 3985
9 d104.aa.net – – [01/Jul/1995:00:00:13 -0400] “GET /shuttle/countdown/ HTTP/1.0” 200 3985
10 129.94.144.152 – – [01/Jul/1995:00:00:13 -0400] “GET / HTTP/1.0” 200 7074
host timestamp
1 199.72.81.55 [01/Jul/1995:00:00:01 -0400
2 unicomp6.unicomp.net [01/Jul/1995:00:00:06 -0400
3 199.120.110.21 [01/Jul/1995:00:00:09 -0400
4 burger.letters.com [01/Jul/1995:00:00:11 -0400
5 199.120.110.21 [01/Jul/1995:00:00:11 -0400
6 burger.letters.com [01/Jul/1995:00:00:12 -0400
7 burger.letters.com [01/Jul/1995:00:00:12 -0400
8 205.212.115.106 [01/Jul/1995:00:00:12 -0400
9 d104.aa.net [01/Jul/1995:00:00:13 -0400
10 129.94.144.152 [01/Jul/1995:00:00:13 -0400
path status content_size
1 /history/apollo/ 200 6245
2 /shuttle/countdown/ 200 3985
3 /shuttle/missions/sts-73/mission-sts-73.html 200 4085
4 /shuttle/countdown/liftoff.html 304 0
5 /shuttle/missions/sts-73/sts-73-patch-small.gif 200 4179
6 /images/NASA-logosmall.gif 304 0
7 /shuttle/countdown/video/livevideo.gif 200 0
8 /shuttle/countdown/countdown.html 200 3985
9 /shuttle/countdown/ 200 3985
10 / 200 7074

4 Webserver logs parsing with SparklyR

install.packages("sparklyr")
library(sparklyr)
library(dplyr)
library(stringr)
#sc <- spark_connect(master = "local", version = "2.1.0")
sc <- spark_connect(method = "databricks")
sdf <-spark_read_text(sc, name="df", path = "/FileStore/tables/NASA_access_log*.gz")
sdf
Installing package into ‘/databricks/spark/R/lib’
# Source: spark [?? x 1]
   line                                                                         
                                                                           
 1 "199.72.81.55 - - [01/Jul/1995:00:00:01 -0400] \"GET /history/apollo/ HTTP/1…
 2 "unicomp6.unicomp.net - - [01/Jul/1995:00:00:06 -0400] \"GET /shuttle/countd…
 3 "199.120.110.21 - - [01/Jul/1995:00:00:09 -0400] \"GET /shuttle/missions/sts…
 4 "burger.letters.com - - [01/Jul/1995:00:00:11 -0400] \"GET /shuttle/countdow…
 5 "199.120.110.21 - - [01/Jul/1995:00:00:11 -0400] \"GET /shuttle/missions/sts…
 6 "burger.letters.com - - [01/Jul/1995:00:00:12 -0400] \"GET /images/NASA-logo…
 7 "burger.letters.com - - [01/Jul/1995:00:00:12 -0400] \"GET /shuttle/countdow…
 8 "205.212.115.106 - - [01/Jul/1995:00:00:12 -0400] \"GET /shuttle/countdown/c…
 9 "d104.aa.net - - [01/Jul/1995:00:00:13 -0400] \"GET /shuttle/countdown/ HTTP…
10 "129.94.144.152 - - [01/Jul/1995:00:00:13 -0400] \"GET / HTTP/1.0\" 200 7074"
# … with more rows
#install.packages(“sparklyr”)
library(sparklyr)
library(dplyr)
library(stringr)
#sc <- spark_connect(master = "local", version = "2.1.0")
sc <- spark_connect(method = "databricks")
sdf <-spark_read_text(sc, name="df", path = "/FileStore/tables/NASA_access_log*.gz")
sdf <- sdf %>% mutate(host = regexp_extract(line, '^(\\\\S+)',1)) %>% 
               mutate(timestamp = regexp_extract(line, '((\\\\S+ -\\\\d{4}))',2)) %>%
               mutate(path = regexp_extract(line, '(\\\\"\\\\w+\\\\s+([^\\\\s]+)\\\\s+HTTP.*")',2)) %>%
               mutate(status = regexp_extract(line, '(^.*"\\\\s+([^\\\\s]+))',2)) %>%
               mutate(content_size = regexp_extract(line, '(^.*\\\\s+(\\\\d+)$)',2))

5 Hosts

5.1  RDD

5.11 Parse and map to hosts to groups

parsed_rdd = rdd.map(lambda line: parse_log2(line)).filter(lambda line: line[1] == 1).map(lambda line : line[0])
parsed_rdd2 = parsed_rdd.map(lambda line: map2groups(line))

# Create tuples of (host,1) and apply reduceByKey() and order by descending
rslt=(parsed_rdd2.map(lambda x😦x[0],1))
                 .reduceByKey(lambda a,b:a+b)
                 .takeOrdered(10, lambda x: -x[1]))
rslt
Out[18]:
[(‘piweba3y.prodigy.com’, 21988),
(‘piweba4y.prodigy.com’, 16437),
(‘piweba1y.prodigy.com’, 12825),
(‘edams.ksc.nasa.gov’, 11962),
(‘163.206.89.4’, 9697),
(‘news.ti.com’, 8161),
(‘www-d1.proxy.aol.com’, 8047),
(‘alyssa.prodigy.com’, 8037),
(‘siltb10.orl.mmc.com’, 7573),
(‘www-a2.proxy.aol.com’, 7516)]

5.12Plot counts of hosts

import seaborn as sns

import pandas as pd import matplotlib.pyplot as plt df=pd.DataFrame(rslt,columns=[‘host’,‘count’]) sns.barplot(x=‘host’,y=‘count’,data=df) plt.subplots_adjust(bottom=0.6, right=0.8, top=0.9) plt.xticks(rotation=“vertical”,fontsize=8) display()

5.2 PySpark

5.21 Compute counts of hosts

df= (cleaned_df
     .groupBy('host')
     .count()
     .orderBy('count',ascending=False))
df.show(5)
+——————–+—–+
| host|count|
+——————–+—–+
|piweba3y.prodigy….|21988|
|piweba4y.prodigy….|16437|
|piweba1y.prodigy….|12825|
| edams.ksc.nasa.gov |11964|
| 163.206.89.4 | 9697|
+——————–+—–+
only showing top 5 rows

5.22 Plot count of hosts

import matplotlib.pyplot as plt
import pandas as pd
import seaborn as sns
df1=df.toPandas()
df2 = df1.head(10)
df2.count()
sns.barplot(x='host',y='count',data=df2)
plt.subplots_adjust(bottom=0.5, right=0.8, top=0.9)
plt.xlabel("Hosts")
plt.ylabel('Count')
plt.xticks(rotation="vertical",fontsize=10)
display()

5.3 SparkR

5.31 Compute count of hosts

c <- SparkR::select(a,a$host)
df=SparkR::summarize(SparkR::groupBy(c, a$host), noHosts = count(a$host))
df1 =head(arrange(df,desc(df$noHosts)),10)
head(df1)
                  host noHosts
1 piweba3y.prodigy.com   17572
2 piweba4y.prodigy.com   11591
3 piweba1y.prodigy.com    9868
4   alyssa.prodigy.com    7852
5  siltb10.orl.mmc.com    7573
6 piweba2y.prodigy.com    5922

5.32 Plot count of hosts

library(ggplot2)
p <-ggplot(data=df1, aes(x=host, y=noHosts,fill=host)) +   geom_bar(stat="identity") + theme(axis.text.x = element_text(angle = 90, hjust = 1)) + xlab('Host') + ylab('Count')
p

5.4 SparklyR

5.41 Compute count of Hosts

df <- sdf %>% select(host,timestamp,path,status,content_size)
df1 <- df %>% select(host) %>% group_by(host) %>% summarise(noHosts=n()) %>% arrange(desc(noHosts))
df2 <-head(df1,10)

5.42 Plot count of hosts

library(ggplot2)

p <-ggplot(data=df2, aes(x=host, y=noHosts,fill=host)) + geom_bar(stat=identity”)+ theme(axis.text.x = element_text(angle = 90, hjust = 1)) + xlab(Host’) + ylab(Count’)

p

6 Paths

6.1 RDD

6.11 Parse and map to hosts to groups

parsed_rdd = rdd.map(lambda line: parse_log2(line)).filter(lambda line: line[1] == 1).map(lambda line : line[0])
parsed_rdd2 = parsed_rdd.map(lambda line: map2groups(line))
rslt=(parsed_rdd2.map(lambda x😦x[5],1))
                 .reduceByKey(lambda a,b:a+b)
                 .takeOrdered(10, lambda x: -x[1]))
rslt
[(‘”GET /images/NASA-logosmall.gif HTTP/1.0″‘, 207520),
(‘”GET /images/KSC-logosmall.gif HTTP/1.0″‘, 164487),
(‘”GET /images/MOSAIC-logosmall.gif HTTP/1.0″‘, 126933),
(‘”GET /images/USA-logosmall.gif HTTP/1.0″‘, 126108),
(‘”GET /images/WORLD-logosmall.gif HTTP/1.0″‘, 124972),
(‘”GET /images/ksclogo-medium.gif HTTP/1.0″‘, 120704),
(‘”GET /ksc.html HTTP/1.0″‘, 83209),
(‘”GET /images/launch-logo.gif HTTP/1.0″‘, 75839),
(‘”GET /history/apollo/images/apollo-logo1.gif HTTP/1.0″‘, 68759),
(‘”GET /shuttle/countdown/ HTTP/1.0″‘, 64467)]

6.12 Plot counts of HTTP Requests

import seaborn as sns

df=pd.DataFrame(rslt,columns=[‘path’,‘count’]) sns.barplot(x=‘path’,y=‘count’,data=df) plt.subplots_adjust(bottom=0.7, right=0.8, top=0.9) plt.xticks(rotation=“vertical”,fontsize=8)

display()

6.2 Pyspark

6.21 Compute count of HTTP Requests

df= (cleaned_df
     .groupBy('path')
     .count()
     .orderBy('count',ascending=False))
df.show(5)
Out[20]:
+——————–+——+
| path| count|
+——————–+——+
|/images/NASA-logo…|208362|
|/images/KSC-logos…|164813|
|/images/MOSAIC-lo…|127656|
|/images/USA-logos…|126820|
|/images/WORLD-log…|125676|
+——————–+——+
only showing top 5 rows

6.22 Plot count of HTTP Requests

import matplotlib.pyplot as plt

import pandas as pd import seaborn as sns df1=df.toPandas() df2 = df1.head(10) df2.count() sns.barplot(x=‘path’,y=‘count’,data=df2)

plt.subplots_adjust(bottom=0.7, right=0.8, top=0.9) plt.xlabel(“HTTP Requests”) plt.ylabel(‘Count’) plt.xticks(rotation=90,fontsize=8)

display()

 

6.3 SparkR

6.31Compute count of HTTP requests

library(SparkR)
c <- SparkR::select(a,a$path)
df=SparkR::summarize(SparkR::groupBy(c, a$path), numRequest = count(a$path))
df1=head(df)

3.14 Plot count of HTTP Requests

library(ggplot2)
p <-ggplot(data=df1, aes(x=path, y=numRequest,fill=path)) +   geom_bar(stat="identity") + theme(axis.text.x = element_text(angle = 90, hjust = 1))+ xlab('Path') + ylab('Count')
p

6.4 SparklyR

6.41 Compute count of paths

df <- sdf %>% select(host,timestamp,path,status,content_size)
df1 <- df %>% select(path) %>% group_by(path) %>% summarise(noPaths=n()) %>% arrange(desc(noPaths))
df2 <-head(df1,10)
df2
# Source: spark [?? x 2]
# Ordered by: desc(noPaths)
   path                                    noPaths
                                        
 1 /images/NASA-logosmall.gif               208362
 2 /images/KSC-logosmall.gif                164813
 3 /images/MOSAIC-logosmall.gif             127656
 4 /images/USA-logosmall.gif                126820
 5 /images/WORLD-logosmall.gif              125676
 6 /images/ksclogo-medium.gif               121286
 7 /ksc.html                                 83685
 8 /images/launch-logo.gif                   75960
 9 /history/apollo/images/apollo-logo1.gif   68858
10 /shuttle/countdown/                       64695

6.42 Plot count of Paths

library(ggplot2)
p <-ggplot(data=df2, aes(x=path, y=noPaths,fill=path)) +   geom_bar(stat="identity")+ theme(axis.text.x = element_text(angle = 90, hjust = 1)) + xlab('Path') + ylab('Count')
p

7.1 RDD

7.11 Compute count of HTTP Status

parsed_rdd = rdd.map(lambda line: parse_log2(line)).filter(lambda line: line[1] == 1).map(lambda line : line[0])

parsed_rdd2 = parsed_rdd.map(lambda line: map2groups(line))
rslt=(parsed_rdd2.map(lambda x😦x[7],1))
                 .reduceByKey(lambda a,b:a+b)
                 .takeOrdered(10, lambda x: -x[1]))
rslt
Out[22]:
[(‘200’, 3095682),
(‘304’, 266764),
(‘302’, 72970),
(‘404’, 20625),
(‘403’, 225),
(‘500’, 65),
(‘501’, 41)]

1.37 Plot counts of HTTP response status’

import seaborn as sns

df=pd.DataFrame(rslt,columns=[‘status’,‘count’]) sns.barplot(x=‘status’,y=‘count’,data=df) plt.subplots_adjust(bottom=0.4, right=0.8, top=0.9) plt.xticks(rotation=“vertical”,fontsize=8)

display()

7.2 Pyspark

7.21 Compute count of HTTP status

status_count=(cleaned_df
                .groupBy('status')
                .count()
                .orderBy('count',ascending=False))
status_count.show()
+——+——-+
|status| count|
+——+——-+
| 200|3100522|
| 304| 266773|
| 302| 73070|
| 404| 20901|
| 403| 225|
| 500| 65|
| 501| 41|
| 400| 15|
| null| 1|

7.22 Plot count of HTTP status

Plot the HTTP return status vs the counts

df1=status_count.toPandas()

df2 = df1.head(10) df2.count() sns.barplot(x=‘status’,y=‘count’,data=df2) plt.subplots_adjust(bottom=0.5, right=0.8, top=0.9) plt.xlabel(“HTTP Status”) plt.ylabel(‘Count’) plt.xticks(rotation=“vertical”,fontsize=10) display()

7.3 SparkR

7.31 Compute count of HTTP Response status

library(SparkR)
c <- SparkR::select(a,a$status)
df=SparkR::summarize(SparkR::groupBy(c, a$status), numStatus = count(a$status))
df1=head(df)

3.16 Plot count of HTTP Response status

library(ggplot2)
p <-ggplot(data=df1, aes(x=status, y=numStatus,fill=status)) +   geom_bar(stat="identity") + theme(axis.text.x = element_text(angle = 90, hjust = 1)) + xlab('Status') + ylab('Count')
p

7.4 SparklyR

7.41 Compute count of status

df <- sdf %>% select(host,timestamp,path,status,content_size)
df1 <- df %>% select(status) %>% group_by(status) %>% summarise(noStatus=n()) %>% arrange(desc(noStatus))
df2 <-head(df1,10)
df2
# Source: spark [?? x 2]
# Ordered by: desc(noStatus)
  status noStatus
       
1 200     3100522
2 304      266773
3 302       73070
4 404       20901
5 403         225
6 500          65
7 501          41
8 400          15
9 ""            1

7.42 Plot count of status

library(ggplot2)

p <-ggplot(data=df2, aes(x=status, y=noStatus,fill=status)) + geom_bar(stat=identity”)+ theme(axis.text.x = element_text(angle = 90, hjust = 1)) + xlab(Status’) + ylab(Count’) p

8.1 RDD

8.12 Compute count of content size

parsed_rdd = rdd.map(lambda line: parse_log2(line)).filter(lambda line: line[1] == 1).map(lambda line : line[0])
parsed_rdd2 = parsed_rdd.map(lambda line: map2groups(line))
rslt=(parsed_rdd2.map(lambda x😦x[8],1))
                 .reduceByKey(lambda a,b:a+b)
                 .takeOrdered(10, lambda x: -x[1]))
rslt
Out[24]:
[(‘0’, 280017),
(‘786’, 167281),
(‘1204’, 140505),
(‘363’, 111575),
(‘234’, 110824),
(‘669’, 110056),
(‘5866’, 107079),
(‘1713’, 66904),
(‘1173’, 63336),
(‘3635’, 55528)]

8.21 Plot content size

import seaborn as sns

df=pd.DataFrame(rslt,columns=[‘content_size’,‘count’]) sns.barplot(x=‘content_size’,y=‘count’,data=df) plt.subplots_adjust(bottom=0.4, right=0.8, top=0.9) plt.xticks(rotation=“vertical”,fontsize=8) display()

8.2 Pyspark

8.21 Compute count of content_size

size_counts=(cleaned_df
                .groupBy('content_size')
                .count()
                .orderBy('count',ascending=False))
size_counts.show(10)
+------------+------+
|content_size| count|
+------------+------+
|           0|313932|
|         786|167709|
|        1204|140668|
|         363|111835|
|         234|111086|
|         669|110313|
|        5866|107373|
|        1713| 66953|
|        1173| 63378|
|        3635| 55579|
+------------+------+
only showing top 10 rows

8.22 Plot counts of content size

Plot the path access versus the counts

df1=size_counts.toPandas()

df2 = df1.head(10) df2.count() sns.barplot(x=‘content_size’,y=‘count’,data=df2) plt.subplots_adjust(bottom=0.5, right=0.8, top=0.9) plt.xlabel(“content_size”) plt.ylabel(‘Count’) plt.xticks(rotation=“vertical”,fontsize=10) display()

8.3 SparkR

8.31 Compute count of content size

library(SparkR)
c <- SparkR::select(a,a$content_size)
df=SparkR::summarize(SparkR::groupBy(c, a$content_size), numContentSize = count(a$content_size))
df1=head(df)
df1
     content_size numContentSize
1        28426           1414
2        78382            293
3        60053              4
4        36067              2
5        13282            236
6        41785            174
8.32 Plot count of content sizes
library(ggplot2)

p <-ggplot(data=df1, aes(x=content_size, y=numContentSize,fill=content_size)) + geom_bar(stat=identity”) + theme(axis.text.x = element_text(angle = 90, hjust = 1)) + xlab(Content Size’) + ylab(Count’)

p

8.4 SparklyR

8.41Compute count of content_size

df <- sdf %>% select(host,timestamp,path,status,content_size)
df1 <- df %>% select(content_size) %>% group_by(content_size) %>% summarise(noContentSize=n()) %>% arrange(desc(noContentSize))
df2 <-head(df1,10)
df2
# Source: spark [?? x 2]
# Ordered by: desc(noContentSize)
   content_size noContentSize
                   
 1 0                   280027
 2 786                 167709
 3 1204                140668
 4 363                 111835
 5 234                 111086
 6 669                 110313
 7 5866                107373
 8 1713                 66953
 9 1173                 63378
10 3635                 55579

8.42 Plot count of content_size

library(ggplot2)
p <-ggplot(data=df2, aes(x=content_size, y=noContentSize,fill=content_size)) +   geom_bar(stat="identity")+ theme(axis.text.x = element_text(angle = 90, hjust = 1)) + xlab('Content size') + ylab('Count')
p

Conclusion: I spent many,many hours struggling with Regex and getting RDDs,Pyspark to work. Also had to spend a lot of time trying to work out the syntax for SparkR and SparklyR for parsing. After you parse the logs plotting and analysis is a piece of cake! This is definitely worth a try!

Watch this space!!

Also see
1. Practical Machine Learning with R and Python – Part 3
2. Deep Learning from first principles in Python, R and Octave – Part 5
3. My book ‘Cricket analytics with cricketr and cricpy’ is now on Amazon
4. Latency, throughput implications for the Cloud
5. Modeling a Car in Android
6. Architecting a cloud based IP Multimedia System (IMS)
7. Dabbling with Wiener filter using OpenCV

To see all posts click Index of posts

Revisiting World Bank data analysis with WDI and gVisMotionChart

Note: I had written a post about 3 years back on World Bank Data Analysis using World Development Indicators (WDI) & gVisMotionCharts. But the motion charts stopped working  some time ago. I have always been wanting to fix this and I now got to actually doing it. The issue was 2 of the WDI indicators had changed. After I fixed this I was able to host the generated motion chart using github.io pages. Please make sure that you enable flash player if you open the motion charts with Google Chrome. You may also have to enable flash if using Firefox, IE etc

Please check out the 2 motions charts with World Bank data

1. World Bank Chart 1
2. World Bank Chart 2

If you are using Chrome please enable (Allow)  ‘flash player’ by clicking on the lock sign in the URL as shown

 

 

 

 

 

 

Introduction

Recently I was surfing the web, when I came across a real cool post New R package to access World Bank data, by Markus Gesmann on using googleVis and motion charts with World Bank Data. The post also introduced me to Hans Rosling, Professor of Sweden’s Karolinska Institute. Hans Rosling, the creator of the famous Gapminder chart, the “Heath and Wealth of Nations” displays global trends through animated charts (A must see!!!). As they say, in Hans Rosling’s hands, data dances and sings. Take a look at  his Ted talks for e.g. Hans Rosling:New insights on poverty. Prof Rosling developed the breakthrough software behind the visualizations, in the Gapminder. The free software, which can be loaded with any data – was purchased by Google in March 2007.

In this post, I recreate some of the Gapminder charts with the help of R packages WDI and googleVis. The WDI  package of  Vincent Arel-Bundock, provides a set of really useful functions to get to data based on the World Bank Data indicators.  googleVis provides motion charts with which you can animate the data.

You can clone/download the code from Github at worldBankAnalysis which is in the form of an Rmd file.

library(WDI)
library(ggplot2)
library(googleVis)
library(plyr)

1.Get the data from 1960 to 2019 for the following

  1. Population – SP.POP.TOTL
  2. GDP in US $ – NY.GDP.MKTP.CD
  3. Life Expectancy at birth (Years) – SP.DYN.LE00.IN
  4. GDP Per capita income – NY.GDP.PCAP.PP.CD
  5. Fertility rate (Births per woman) – SP.DYN.TFRT.IN
  6. Poverty headcount ratio – SI.POV.NAHC
# World population total
population = WDI(indicator='SP.POP.TOTL', country="all",start=1960, end=2019)
# GDP in US $
gdp= WDI(indicator='NY.GDP.MKTP.CD', country="all",start=1960, end=2019)
# Life expectancy at birth (Years)
lifeExpectancy= WDI(indicator='SP.DYN.LE00.IN', country="all",start=1960, end=2019)
# GDP Per capita
income = WDI(indicator='NY.GDP.PCAP.PP.CD', country="all",start=1960, end=2019)
# Fertility rate (births per woman)
fertility = WDI(indicator='SP.DYN.TFRT.IN', country="all",start=1960, end=2019)
# Poverty head count
poverty= WDI(indicator='SI.POV.NAHC', country="all",start=1960, end=2019)

2.Rename the columns

names(population)[3]="Total population"
names(lifeExpectancy)[3]="Life Expectancy (Years)"
names(gdp)[3]="GDP (US$)"
names(income)[3]="GDP per capita income"
names(fertility)[3]="Fertility (Births per woman)"
names(poverty)[3]="Poverty headcount ratio"

3.Join the data frames

Join the individual data frames to one large wide data frame with all the indicators for the countries
j1 <- join(population, gdp)

j2 <- join(j1,lifeExpectancy)

j3 <- join(j2,income)

j4 <- join(j3,poverty)

wbData <- join(j4,fertility)

4.Use WDI_data

Use WDI_data to get the list of indicators and the countries. Join the countries and region

#This returns  list of 2 matrixes
wdi_data =WDI_data
# The 1st matrix is the list is the set of all World Bank Indicators
indicators=wdi_data[[1]]
# The 2nd  matrix gives the set of countries and regions
countries=wdi_data[[2]]
df = as.data.frame(countries)
aa <- df$region != "Aggregates"
# Remove the aggregates
countries_df <- df[aa,]
# Subset from the development data only those corresponding to the countries
bb = subset(wbData, country %in% countries_df$country)
cc = join(bb,countries_df)
dd = complete.cases(cc)
developmentDF = cc[dd,]

5.Create and display the motion chart

gg<- gvisMotionChart(cc,
                                idvar = "country",
                                timevar = "year",
                                xvar = "GDP",
                                yvar = "Life Expectancy",
                                sizevar ="Population",
                                colorvar = "region")
plot(gg)
cat(gg$html$chart, file="chart1.html")

Note: Unfortunately it is not possible to embed the motion chart in WordPress. It is has to hosted on a server as a Webpage. After exploring several possibilities I came up with the following process to display the animation graph. The plot is saved as a html file using ‘cat’ as shown above. The WorldBank_chart1.html page is then hosted as a Github page (gh-page) on Github.

Here is the ggvisMotionChart

Do give  World Bank Motion Chart1  a spin.  Here is how the Motion Chart has to be used

untitled

You can select Life Expectancy, Population, Fertility etc by clicking the black arrows. The blue arrow shows the ‘play’ button to set animate the motion chart. You can also select the countries and change the size of the circles. Do give it a try. Here are some quick analysis by playing around with the motion charts with different parameters chosen

The set of charts below are screenshots captured by running the motion chart World Bank Motion Chart1

a. Life Expectancy vs Fertility chart

This chart is used by Hans Rosling in his Ted talk. The left chart shows low life expectancy and high fertility rate for several sub Saharan and East Asia Pacific countries in the early 1960’s. Today the fertility has dropped and the life expectancy has increased overall. However the sub Saharan countries still have a high fertility rate

pic1

b. Population vs GDP

The chart below shows that GDP of India and China have the same GDP from 1973-1994 with US and Japan well ahead.

pic2

From 1998- 2014 China really pulls away from India and Japan as seen below

pic3

c. Per capita income vs Life Expectancy

In the 1990’s the per capita income and life expectancy of the sub -saharan countries are low (42-50). Japan and US have a good life expectancy in 1990’s. In 2014 the per capita income of the sub-saharan countries are still low though the life expectancy has marginally improved.

pic4

d. Population vs Poverty headcount

pic5

In the early 1990’s China had a higher poverty head count ratio than India. By 2004 China had this all figured out and the poverty head count ratio drops significantly. This can also be seen in the chart below.

pop_pov3

In the chart above China shows a drastic reduction in poverty headcount ratio vs India. Strangely Zambia shows an increase in the poverty head count ratio.

6.Get the data for the 2nd set of indicators

  1. Total population  – SP.POP.TOTL
  2. GDP in US$ – NY.GDP.MKTP.CD
  3. Access to electricity (% population) – EG.ELC.ACCS.ZS
  4. Electricity consumption KWh per capita -EG.USE.ELEC.KH.PC
  5. CO2 emissions -EN.ATM.CO2E.KT
  6. Basic Sanitation Access – SH.STA.BASS.ZS
# World population
population = WDI(indicator='SP.POP.TOTL', country="all",start=1960, end=2016)
# GDP in US $
gdp= WDI(indicator='NY.GDP.MKTP.CD', country="all",start=1960, end=2016)
# Access to electricity (% population)
elecAccess= WDI(indicator='EG.ELC.ACCS.ZS', country="all",start=1960, end=2016)
# Electric power consumption Kwh per capita
elecConsumption= WDI(indicator='EG.USE.ELEC.KH.PC', country="all",start=1960, end=2016)
#CO2 emissions
co2Emissions= WDI(indicator='EN.ATM.CO2E.KT', country="all",start=1960, end=2016)
# Access to sanitation (% population)
sanitationAccess= WDI(indicator='SH.STA.ACSN', country="all",start=1960, end=2016)

7.Rename the columns

names(population)[3]="Total population"
names(gdp)[3]="GDP US($)"
names(elecAccess)[3]="Access to Electricity (% popn)"
names(elecConsumption)[3]="Electric power consumption (KWH per capita)"
names(co2Emissions)[3]="CO2 emisions"
names(sanitationAccess)[3]="Access to sanitation(% popn)"

8.Join the individual data frames

Join the individual data frames to one large wide data frame with all the indicators for the countries


j1 <- join(population, gdp)
j2 <- join(j1,elecAccess)
j3 <- join(j2,elecConsumption)
j4 <- join(j3,co2Emissions)
wbData1 <- join(j3,sanitationAccess)

 

9.Use WDI_data

Use WDI_data to get the list of indicators and the countries. Join the countries and region

#This returns  list of 2 matrixes
wdi_data =WDI_data
# The 1st matrix is the list is the set of all World Bank Indicators
indicators=wdi_data[[1]]
# The 2nd  matrix gives the set of countries and regions
countries=wdi_data[[2]]
df = as.data.frame(countries)
aa <- df$region != "Aggregates"
# Remove the aggregates
countries_df <- df[aa,]
# Subset from the development data only those corresponding to the countries
ee = subset(wbData1, country %in% countries_df$country)
ff = join(ee,countries_df)
## Joining by: iso2c, country

10.Create and display the motion chart

gg1<- gvisMotionChart(ff,
                                idvar = "country",
                                timevar = "year",
                                xvar = "GDP",
                                yvar = "Access to Electricity",
                                sizevar ="Population",
                                colorvar = "region")
plot(gg1)
cat(gg1$html$chart, file="chart2.html")

This is World Bank Motion Chart2  which has a different set of parameters like Access to Energy, CO2 emissions etc

The set of charts below are screenshots of the motion chart World Bank Motion Chart 2

a. Access to Electricity vs Population
pic6The above chart shows that in China 100% population have access to electricity. India has made decent progress from 50% in 1990 to 79% in 2012. However Pakistan seems to have been much better in providing access to electricity. Pakistan moved from 59% to close 98% access to electricity

b. Power consumption vs population

powercon

The above chart shows the Power consumption vs Population. China and India have proportionally much lower consumption that Norway, US, Canada

c. CO2 emissions vs Population

pic7

In 1963 the CO2 emissions were fairly low and about comparable for all countries. US, India have shown a steady increase while China shows a steep increase. Interestingly UK shows a drop in CO2 emissions

d.  Access to sanitation
san

India shows an improvement but it has a long way to go with only 40% of population with access to sanitation. China has made much better strides with 80% having access to sanitation in 2015. Strangely Nigeria shows a drop in sanitation by almost about 20% of population.

The code is available at Github at worldBankAnalysis

Conclusion: So there you have it. I have shown some screenshots of some sample parameters of the World indicators. Please try to play around with World Bank Motion Chart1 & World Bank Motion Chart 2  with your own set of parameters and countries.  You can also create your own motion chart from the 100s of WDI indicators avaialable at  World Bank Data indicator.

Also see
1. My book ‘Deep Learning from first principles:Second Edition’ now on Amazon
2.  Dabbling with Wiener filter using OpenCV
3. My book ‘Practical Machine Learning in R and Python: Third edition’ on Amazon
4. Design Principles of Scalable, Distributed Systems
5. Re-introducing cricketr! : An R package to analyze performances of cricketers
6. Natural language processing: What would Shakespeare say?
7. Brewing a potion with Bluemix, PostgreSQL, Node.js in the cloud
8. Simulating an Edge Shape in Android

To see all posts Index of posts

Analyzing performances of cricketers using cricketr template

This post includes a template which you can use for analyzing the performances of cricketers, both batsmen and bowlers in Test, ODI and Twenty 20 cricket using my R package cricketr. To see actual usage of functions in the R package cricketr see Introducing cricketr! : An R package to analyze performances of cricketers.

This template can be downloaded from Github at cricketer-template

The ‘cricketr’ package uses the statistics info available in ESPN Cricinfo Statsguru. The current version of this package supports all formats of the game including Test, ODI and Twenty20 versions.

You should be able to install the package from GitHub and use the many functions available in the package. Please mindful of the ESPN Cricinfo Terms of Use

Take a look at my short video tutorial on my R package cricketr on Youtube – R package cricketr – A short tutorial

Do check out my interactive Shiny app implementation using the cricketr package – Sixer – R package cricketr’s new Shiny avatar

Important note 1: The latest release of ‘cricketr’ now includes the ability to analyze performances of teams now!!  See Cricketr adds team analytics to its repertoire!!!

Important note 2 : Cricketr can now do a more fine-grained analysis of players, see Cricketr learns new tricks : Performs fine-grained analysis of players

Important note 3: Do check out the python avatar of cricketr, ‘cricpy’ in my post ‘Introducing cricpy:A python package to analyze performances of cricketers

The cricketr package

The cricketr package has several functions that perform several different analyses on both batsman and bowlers. The package has function that plot percentage frequency runs or wickets, runs likelihood for a batsman, relative run/strike rates of batsman and relative performance/economy rate for bowlers are available.

Other interesting functions include batting performance moving average, forecast and a function to check whether the batsmans in in-form or out-of-form.

The data for a particular player can be obtained with the getPlayerData() function. To do you will need to go to ESPN CricInfo Player and type in the name of the player for e.g Ricky Ponting, Sachin Tendulkar etc. This will bring up a page which have the profile number for the player e.g. for Sachin Tendulkar this would be http://www.espncricinfo.com/india/content/player/35320.html. Hence, Sachin’s profile is 35320. This can be used to get the data for Tendulkar as shown below

The cricketr package is now available from CRAN!!! You should be able to install directly with

1. Install the cricketr package

if (!require("cricketr")){
    install.packages("cricketr",lib = "c:/test")
}
library(cricketr)

The cricketr package includes some pre-packaged sample (.csv) files. You can use these sample to test functions as shown below

# Retrieve the file path of a data file installed with cricketr
#pathToFile <- system.file("data", "tendulkar.csv", package = "cricketr")
#batsman4s(pathToFile, "Sachin Tendulkar")

# The general format is pkg-function(pathToFile,par1,...)
#batsman4s(<path-To-File>,"Sachin Tendulkar")

“` The pre-packaged files can be accessed as shown above. To get the data of any player use the function in Test, ODI and Twenty20 use the following

2. For Test cricket

#tendulkar <- getPlayerData(35320,dir="..",file="tendulkar.csv",type="batting",homeOrAway=c(1,2), result=c(1,2,4))

2a. For ODI cricket

#tendulkarOD <- getPlayerDataOD(35320,dir="..",file="tendulkarOD.csv",type="batting")

2b For Twenty 20 cricket

#tendulkarT20 <- getPlayerDataTT(35320,dir="..",file="tendulkarT20.csv",type="batting")

Analysis of batsmen

Important Note This needs to be done only once for a player. This function stores the player’s data in a CSV file (for e.g. tendulkar.csv as above) which can then be reused for all other functions. Once we have the data for the players many analyses can be done. This post will use the stored CSV file obtained with a prior getPlayerData for all subsequent analyses

Sachin Tendulkar’s performance – Basic Analyses

The 3 plots below provide the following for Tendulkar

  1. Frequency percentage of runs in each run range over the whole career
  2. Mean Strike Rate for runs scored in the given range
  3. A histogram of runs frequency percentages in runs ranges For example

3. Basic analyses

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#batsmanRunsFreqPerf("./tendulkar.csv","Tendulkar")
#batsmanMeanStrikeRate("./tendulkar.csv","Tendulkar")
#batsmanRunsRanges("./tendulkar.csv","Tendulkar")
dev.off()
## null device 
##           1
  1. Player 1
  2. Player 2
  3. Player 3
  4. Player 4

4. More analyses

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#batsman4s("./player1.csv","Player1")
#batsman6s("./player1.csv","Player1")
#batsmanMeanStrikeRate("./player1.csv","Player1")

# For ODI and T20
#batsmanScoringRateODTT("./player1.csv","Player1")
dev.off()
## null device 
##           1
par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#batsman4s("./player2.csv","Player2")
#batsman6s("./player2.csv","Player2")
#batsmanMeanStrikeRate("./player2.csv","Player2")
# For ODI and T20
#batsmanScoringRateODTT("./player1.csv","Player1")
dev.off()
## null device 
##           1
par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#batsman4s("./player3.csv","Player3")
#batsman6s("./player3.csv","Player3")
#batsmanMeanStrikeRate("./player3.csv","Player3")
# For ODI and T20
#batsmanScoringRateODTT("./player1.csv","Player1")

dev.off()
## null device 
##           1
par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#batsman4s("./player4.csv","Player4")
#batsman6s("./player4.csv","Player4")
#batsmanMeanStrikeRate("./player4.csv","Player4")
# For ODI and T20
#batsmanScoringRateODTT("./player1.csv","Player1")
dev.off()
## null device 
##           1

Note: For mean strike rate in ODI and Twenty20 use the function batsmanScoringRateODTT()

5.Boxplot histogram plot

This plot shows a combined boxplot of the Runs ranges and a histogram of the Runs Frequency

#batsmanPerfBoxHist("./player1.csv","Player1")
#batsmanPerfBoxHist("./player2.csv","Player2")
#batsmanPerfBoxHist("./player3.csv","Player3")
#batsmanPerfBoxHist("./player4.csv","Player4")

6. Contribution to won and lost matches

For the 2 functions below you will have to use the getPlayerDataSp() function. I have commented this as I already have these files. This function can only be used for Test matches

#player1sp <- getPlayerDataSp(xxxx,tdir=".",tfile="player1sp.csv",ttype="batting")
#player2sp <- getPlayerDataSp(xxxx,tdir=".",tfile="player2sp.csv",ttype="batting")
#player3sp <- getPlayerDataSp(xxxx,tdir=".",tfile="player3sp.csv",ttype="batting")
#player4sp <- getPlayerDataSp(xxxx,tdir=".",tfile="player4sp.csv",ttype="batting")
par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanContributionWonLost("player1sp.csv","Player1")
#batsmanContributionWonLost("player2sp.csv","Player2")
#batsmanContributionWonLost("player3sp.csv","Player3")
#batsmanContributionWonLost("player4sp.csv","Player4")
dev.off()
## null device 
##           1

7, Performance at home and overseas

This function also requires the use of getPlayerDataSp() as shown above. This can only be used for Test matches

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanPerfHomeAway("player1sp.csv","Player1")
#batsmanPerfHomeAway("player2sp.csv","Player2")
#batsmanPerfHomeAway("player3sp.csv","Player3")
#batsmanPerfHomeAway("player4sp.csv","Player4")
dev.off()
## null device 
##           1

8. Batsman average at different venues

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanAvgRunsGround("./player1.csv","Player1")
#batsmanAvgRunsGround("./player2.csv","Player2")
#batsmanAvgRunsGround("./player3.csv","Ponting")
#batsmanAvgRunsGround("./player4.csv","Player4")
dev.off()
## null device 
##           1

9. Batsman average against different opposition

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanAvgRunsOpposition("./player1.csv","Player1")
#batsmanAvgRunsOpposition("./player2.csv","Player2")
#batsmanAvgRunsOpposition("./player3.csv","Ponting")
#batsmanAvgRunsOpposition("./player4.csv","Player4")
dev.off()
## null device 
##           1

10. Runs Likelihood of batsman

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanRunsLikelihood("./player1.csv","Player1")
#batsmanRunsLikelihood("./player2.csv","Player2")
#batsmanRunsLikelihood("./player3.csv","Ponting")
#batsmanRunsLikelihood("./player4.csv","Player4")
dev.off()
## null device 
##           1

11. Moving Average of runs in career

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanMovingAverage("./player1.csv","Player1")
#batsmanMovingAverage("./player2.csv","Player2")
#batsmanMovingAverage("./player3.csv","Ponting")
#batsmanMovingAverage("./player4.csv","Player4")
dev.off()
## null device 
##           1

12. Cumulative Average runs of batsman in career

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanCumulativeAverageRuns("./player1.csv","Player1")
#batsmanCumulativeAverageRuns("./player2.csv","Player2")
#batsmanCumulativeAverageRuns("./player3.csv","Ponting")
#batsmanCumulativeAverageRuns("./player4.csv","Player4")
dev.off()
## null device 
##           1

13. Cumulative Average strike rate of batsman in career

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanCumulativeStrikeRate("./player1.csv","Player1")
#batsmanCumulativeStrikeRate("./player2.csv","Player2")
#batsmanCumulativeStrikeRate("./player3.csv","Ponting")
#batsmanCumulativeStrikeRate("./player4.csv","Player4")
dev.off()
## null device 
##           1

14. Future Runs forecast

Here are plots that forecast how the batsman will perform in future. In this case 90% of the career runs trend is uses as the training set. the remaining 10% is the test set.

A Holt-Winters forecating model is used to forecast future performance based on the 90% training set. The forecated runs trend is plotted. The test set is also plotted to see how close the forecast and the actual matches

Take a look at the runs forecasted for the batsman below.

par(mfrow=c(2,2))
par(mar=c(4,4,2,2))
#batsmanPerfForecast("./player1.csv","Player1")
#batsmanPerfForecast("./player2.csv","Player2")
#batsmanPerfForecast("./player3.csv","Player3")
#batsmanPerfForecast("./player4.csv","Player4")
dev.off()
## null device 
##           1

15. Relative Mean Strike Rate plot

The plot below compares the Mean Strike Rate of the batsman for each of the runs ranges of 10 and plots them. The plot indicate the following

frames <- list("./player1.csv","./player2.csv","player3.csv","player4.csv")
names <- list("Player1","Player2","Player3","Player4")
#relativeBatsmanSR(frames,names)

16. Relative Runs Frequency plot

The plot below gives the relative Runs Frequency Percetages for each 10 run bucket. The plot below show

frames <- list("./player1.csv","./player2.csv","player3.csv","player4.csv")
names <- list("Player1","Player2","Player3","Player4")
#relativeRunsFreqPerf(frames,names)

17. Relative cumulative average runs in career

frames <- list("./player1.csv","./player2.csv","player3.csv","player4.csv")
names <- list("Player1","Player2","Player3","Player4")
#relativeBatsmanCumulativeAvgRuns(frames,names)

18. Relative cumulative average strike rate in career

frames <- list("./player1.csv","./player2.csv","player3.csv","player4.csv")
names <- list("Player1","Player2","Player3","player4")
#relativeBatsmanCumulativeStrikeRate(frames,names)

19. Check Batsman In-Form or Out-of-Form

The below computation uses Null Hypothesis testing and p-value to determine if the batsman is in-form or out-of-form. For this 90% of the career runs is chosen as the population and the mean computed. The last 10% is chosen to be the sample set and the sample Mean and the sample Standard Deviation are caculated.

The Null Hypothesis (H0) assumes that the batsman continues to stay in-form where the sample mean is within 95% confidence interval of population mean The Alternative (Ha) assumes that the batsman is out of form the sample mean is beyond the 95% confidence interval of the population mean.

A significance value of 0.05 is chosen and p-value us computed If p-value >= .05 – Batsman In-Form If p-value < 0.05 – Batsman Out-of-Form

Note Ideally the p-value should be done for a population that follows the Normal Distribution. But the runs population is usually left skewed. So some correction may be needed. I will revisit this later

This is done for the Top 4 batsman

#checkBatsmanInForm("./player1.csv","Player1")
#checkBatsmanInForm("./player2.csv","Player2")
#checkBatsmanInForm("./player3.csv","Player3")
#checkBatsmanInForm("./player4.csv","Player4")

20. 3D plot of Runs vs Balls Faced and Minutes at Crease

The plot is a scatter plot of Runs vs Balls faced and Minutes at Crease. A prediction plane is fitted

par(mfrow=c(1,2))
par(mar=c(4,4,2,2))
#battingPerf3d("./player1.csv","Player1")
#battingPerf3d("./player2.csv","Player2")
par(mfrow=c(1,2))
par(mar=c(4,4,2,2))
#battingPerf3d("./player3.csv","Player3")
#battingPerf3d("./player4.csv","player4")
dev.off()
## null device 
##           1

21. Predicting Runs given Balls Faced and Minutes at Crease

A multi-variate regression plane is fitted between Runs and Balls faced +Minutes at crease.

BF <- seq( 10, 400,length=15)
Mins <- seq(30,600,length=15)
newDF <- data.frame(BF,Mins)
#Player1 <- batsmanRunsPredict("./player1.csv","Player1",newdataframe=newDF)
#Player2 <- batsmanRunsPredict("./player2.csv","Player2",newdataframe=newDF)
#ponting <- batsmanRunsPredict("./player3.csv","Player3",newdataframe=newDF)
#sangakkara <- batsmanRunsPredict("./player4.csv","Player4",newdataframe=newDF)
#batsmen <-cbind(round(Player1$Runs),round(Player2$Runs),round(Player3$Runs),round(Player4$Runs))
#colnames(batsmen) <- c("Player1","Player2","Player3","Player4")
#newDF <- data.frame(round(newDF$BF),round(newDF$Mins))
#colnames(newDF) <- c("BallsFaced","MinsAtCrease")
#predictedRuns <- cbind(newDF,batsmen)
#predictedRuns

Analysis of bowlers

  1. Bowler1
  2. Bowler2
  3. Bowler3
  4. Bowler4

player1 <- getPlayerData(xxxx,dir=“..”,file=“player1.csv”,type=“bowling”) Note For One day you will have to use getPlayerDataOD() and for Twenty20 it is getPlayerDataTT()

21. Wicket Frequency Plot

This plot below computes the percentage frequency of number of wickets taken for e.g 1 wicket x%, 2 wickets y% etc and plots them as a continuous line

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerWktsFreqPercent("./bowler1.csv","Bowler1")
#bowlerWktsFreqPercent("./bowler2.csv","Bowler2")
#bowlerWktsFreqPercent("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

22. Wickets Runs plot

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerWktsRunsPlot("./bowler1.csv","Bowler1")
#bowlerWktsRunsPlot("./bowler2.csv","Bowler2")
#bowlerWktsRunsPlot("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

23. Average wickets at different venues

#bowlerAvgWktsGround("./bowler3.csv","Bowler3")

24. Average wickets against different opposition

#bowlerAvgWktsOpposition("./bowler3.csv","Bowler3")

25. Wickets taken moving average

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerMovingAverage("./bowler1.csv","Bowler1")
#bowlerMovingAverage("./bowler2.csv","Bowler2")
#bowlerMovingAverage("./bowler3.csv","Bowler3")

dev.off()
## null device 
##           1

26. Cumulative Wickets taken

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerCumulativeAvgWickets("./bowler1.csv","Bowler1")
#bowlerCumulativeAvgWickets("./bowler2.csv","Bowler2")
#bowlerCumulativeAvgWickets("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

27. Cumulative Economy rate

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerCumulativeAvgEconRate("./bowler1.csv","Bowler1")
#bowlerCumulativeAvgEconRate("./bowler2.csv","Bowler2")
#bowlerCumulativeAvgEconRate("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

28. Future Wickets forecast

Here are plots that forecast how the bowler will perform in future. In this case 90% of the career wickets trend is used as the training set. the remaining 10% is the test set.

A Holt-Winters forecating model is used to forecast future performance based on the 90% training set. The forecated wickets trend is plotted. The test set is also plotted to see how close the forecast and the actual matches

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerPerfForecast("./bowler1.csv","Bowler1")
#bowlerPerfForecast("./bowler2.csv","Bowler2")
#bowlerPerfForecast("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

29. Contribution to matches won and lost

As discussed above the next 2 charts require the use of getPlayerDataSp(). This can only be done for Test matches

#bowler1sp <- getPlayerDataSp(xxxx,tdir=".",tfile="bowler1sp.csv",ttype="bowling")
#bowler2sp <- getPlayerDataSp(xxxx,tdir=".",tfile="bowler2sp.csv",ttype="bowling")
#bowler3sp <- getPlayerDataSp(xxxx,tdir=".",tfile="bowler3sp.csv",ttype="bowling")
par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerContributionWonLost("bowler1sp","Bowler1")
#bowlerContributionWonLost("bowler2sp","Bowler2")
#bowlerContributionWonLost("bowler3sp","Bowler3")
dev.off()
## null device 
##           1

30. Performance home and overseas.

This can only be done for Test matches

par(mfrow=c(1,3))
par(mar=c(4,4,2,2))
#bowlerPerfHomeAway("bowler1sp","Bowler1")
#bowlerPerfHomeAway("bowler2sp","Bowler2")
#bowlerPerfHomeAway("bowler3sp","Bowler3")
dev.off()
## null device 
##           1

31 Relative Wickets Frequency Percentage

frames <- list("./bowler1.csv","./bowler3.csv","bowler2.csv")
names <- list("Bowler1","Bowler3","Bowler2")
#relativeBowlingPerf(frames,names)

32 Relative Economy Rate against wickets taken

frames <- list("./bowler1.csv","./bowler3.csv","bowler2.csv")
names <- list("Bowler1","Bowler3","Bowler2")
#relativeBowlingER(frames,names)

33 Relative cumulative average wickets of bowlers in career

frames <- list("./bowler1.csv","./bowler3.csv","bowler2.csv")
names <- list("Bowler1","Bowler3","Bowler2")
#relativeBowlerCumulativeAvgWickets(frames,names)

34 Relative cumulative average economy rate of bowlers

frames <- list("./bowler1.csv","./bowler3.csv","bowler2.csv")
names <- list("Bowler1","Bowler3","Bowler2")
#relativeBowlerCumulativeAvgEconRate(frames,names)

35 Check for bowler in-form/out-of-form

The below computation uses Null Hypothesis testing and p-value to determine if the bowler is in-form or out-of-form. For this 90% of the career wickets is chosen as the population and the mean computed. The last 10% is chosen to be the sample set and the sample Mean and the sample Standard Deviation are caculated.

The Null Hypothesis (H0) assumes that the bowler continues to stay in-form where the sample mean is within 95% confidence interval of population mean The Alternative (Ha) assumes that the bowler is out of form the sample mean is beyond the 95% confidence interval of the population mean.

A significance value of 0.05 is chosen and p-value us computed If p-value >= .05 – Batsman In-Form If p-value < 0.05 – Batsman Out-of-Form

Note Ideally the p-value should be done for a population that follows the Normal Distribution. But the runs population is usually left skewed. So some correction may be needed. I will revisit this later

Note: The check for the form status of the bowlers indicate

#checkBowlerInForm("./bowler1.csv","Bowler1")
#checkBowlerInForm("./bowler2.csv","Bowler2")
#checkBowlerInForm("./bowler3.csv","Bowler3")
dev.off()
## null device 
##           1

Big Data-2: Move into the big league:Graduate from R to SparkR

This post is a continuation of my earlier post Big Data-1: Move into the big league:Graduate from Python to Pyspark. While the earlier post discussed parallel constructs in Python and Pyspark, this post elaborates similar and key constructs in R and SparkR. While this post just focuses on the programming part of R and SparkR it is essential to understand and fully grasp the concept of Spark, RDD and how data is distributed across the clusters. This post like the earlier post shows how if you already have a good handle of R, you can easily graduate to Big Data with SparkR

Note 1: This notebook has also been published at Databricks community site Big Data-2: Move into the big league:Graduate from R to SparkR

Note 2: You can download this RMarkdown file from Github at Big Data- Python to Pyspark and R to SparkR
1a. Read CSV- R

Note: To upload the CSV to databricks see the video Upload Flat File to Databricks Table

# Read CSV file
tendulkar= read.csv("/dbfs/FileStore/tables/tendulkar.csv",stringsAsFactors = FALSE,na.strings=c(NA,"-"))
#Check the dimensions of the dataframe
dim(tendulkar)
[1] 347  12
1b. Read CSV – SparkR
# Load the SparkR library
library(SparkR)
# Initiate a SparkR session
sparkR.session()
tendulkar1 <- read.df("/FileStore/tables/tendulkar.csv", 
                header = "true", 
                delimiter = ",", 
                source = "csv", 
                inferSchema = "true", 
                na.strings = "")

# Check the dimensions of the dataframe
dim(tendulkar1)
[1] 347  12
2a. Data frame shape – R
# Get the shape of the dataframe in R
dim(tendulkar)
[1] 347  12
2b. Dataframe shape – SparkR

The same ‘dim’ command works in SparkR too!

dim(tendulkar1)
[1] 347  12
3a . Dataframe columns – R
# Get the names
names(tendulkar) # Also colnames(tendulkar)
 [1] "Runs"       "Mins"       "BF"         "X4s"        "X6s"       
 [6] "SR"         "Pos"        "Dismissal"  "Inns"       "Opposition"
[11] "Ground"     "Start.Date"
3b. Dataframe columns – SparkR
names(tendulkar1)
 [1] "Runs"       "Mins"       "BF"         "4s"         "6s"        
 [6] "SR"         "Pos"        "Dismissal"  "Inns"       "Opposition"
[11] "Ground"     "Start Date"
4a. Rename columns – R
names(tendulkar)=c('Runs','Minutes','BallsFaced','Fours','Sixes','StrikeRate','Position','Dismissal','Innings','Opposition','Ground','StartDate')
names(tendulkar)
 [1] "Runs"       "Minutes"    "BallsFaced" "Fours"      "Sixes"     
 [6] "StrikeRate" "Position"   "Dismissal"  "Innings"    "Opposition"
[11] "Ground"     "StartDate"
4b. Rename columns – SparkR
names(tendulkar1)=c('Runs','Minutes','BallsFaced','Fours','Sixes','StrikeRate','Position','Dismissal','Innings','Opposition','Ground','StartDate')
names(tendulkar1)
 [1] "Runs"       "Minutes"    "BallsFaced" "Fours"      "Sixes"     
 [6] "StrikeRate" "Position"   "Dismissal"  "Innings"    "Opposition"
[11] "Ground"     "StartDate"
5a. Summary – R
summary(tendulkar)
     Runs              Minutes        BallsFaced         Fours       
 Length:347         Min.   :  1.0   Min.   :  0.00   Min.   : 0.000  
 Class :character   1st Qu.: 33.0   1st Qu.: 22.00   1st Qu.: 1.000  
 Mode  :character   Median : 82.0   Median : 58.50   Median : 4.000  
                    Mean   :125.5   Mean   : 89.75   Mean   : 6.274  
                    3rd Qu.:181.0   3rd Qu.:133.25   3rd Qu.: 9.000  
                    Max.   :613.0   Max.   :436.00   Max.   :35.000  
                    NA's   :18      NA's   :19       NA's   :19      
     Sixes          StrikeRate        Position     Dismissal        
 Min.   :0.0000   Min.   :  0.00   Min.   :2.00   Length:347        
 1st Qu.:0.0000   1st Qu.: 38.09   1st Qu.:4.00   Class :character  
 Median :0.0000   Median : 52.25   Median :4.00   Mode  :character  
 Mean   :0.2097   Mean   : 51.79   Mean   :4.24                     
 3rd Qu.:0.0000   3rd Qu.: 65.09   3rd Qu.:4.00                     
 Max.   :4.0000   Max.   :166.66   Max.   :7.00                     
 NA's   :18       NA's   :20       NA's   :18                       
    Innings       Opposition           Ground           StartDate        
 Min.   :1.000   Length:347         Length:347         Length:347        
 1st Qu.:1.000   Class :character   Class :character   Class :character  
 Median :2.000   Mode  :character   Mode  :character   Mode  :character  
 Mean   :2.376                                                           
 3rd Qu.:3.000                                                           
 Max.   :4.000                                                           
 NA's   :1
5b. Summary – SparkR
summary(tendulkar1)
SparkDataFrame[summary:string, Runs:string, Minutes:string, BallsFaced:string, Fours:string, Sixes:string, StrikeRate:string, Position:string, Dismissal:string, Innings:string, Opposition:string, Ground:string, StartDate:string]
6a. Displaying details of dataframe with str() – R
str(tendulkar)
'data.frame':	347 obs. of  12 variables:
 $ Runs      : chr  "15" "DNB" "59" "8" ...
 $ Minutes   : int  28 NA 254 24 124 74 193 1 50 324 ...
 $ BallsFaced: int  24 NA 172 16 90 51 134 1 44 266 ...
 $ Fours     : int  2 NA 4 1 5 5 6 0 3 5 ...
 $ Sixes     : int  0 NA 0 0 0 0 0 0 0 0 ...
 $ StrikeRate: num  62.5 NA 34.3 50 45.5 ...
 $ Position  : int  6 NA 6 6 7 6 6 6 6 6 ...
 $ Dismissal : chr  "bowled" NA "lbw" "run out" ...
 $ Innings   : int  2 4 1 3 1 1 3 2 3 1 ...
 $ Opposition: chr  "v Pakistan" "v Pakistan" "v Pakistan" "v Pakistan" ...
 $ Ground    : chr  "Karachi" "Karachi" "Faisalabad" "Faisalabad" ...
 $ StartDate : chr  "15-Nov-89" "15-Nov-89" "23-Nov-89" "23-Nov-89" ...
6b. Displaying details of dataframe with str() – SparkR
str(tendulkar1)
'SparkDataFrame': 12 variables:
 $ Runs      : chr "15" "DNB" "59" "8" "41" "35"
 $ Minutes   : chr "28" "-" "254" "24" "124" "74"
 $ BallsFaced: chr "24" "-" "172" "16" "90" "51"
 $ Fours     : chr "2" "-" "4" "1" "5" "5"
 $ Sixes     : chr "0" "-" "0" "0" "0" "0"
 $ StrikeRate: chr "62.5" "-" "34.3" "50" "45.55" "68.62"
 $ Position  : chr "6" "-" "6" "6" "7" "6"
 $ Dismissal : chr "bowled" "-" "lbw" "run out" "bowled" "lbw"
 $ Innings   : chr "2" "4" "1" "3" "1" "1"
 $ Opposition: chr "v Pakistan" "v Pakistan" "v Pakistan" "v Pakistan" "v Pakistan" "v Pakistan"
 $ Ground    : chr "Karachi" "Karachi" "Faisalabad" "Faisalabad" "Lahore" "Sialkot"
 $ StartDate : chr "15-Nov-89" "15-Nov-89" "23-Nov-89" "23-Nov-89" "1-Dec-89" "9-Dec-89"
7a. Head & tail -R
print(head(tendulkar),3)
print(tail(tendulkar),3)
 Runs Minutes BallsFaced Fours Sixes StrikeRate Position Dismissal Innings
1   15      28         24     2     0      62.50        6    bowled       2
2  DNB      NA         NA    NA    NA         NA       NA             4
3   59     254        172     4     0      34.30        6       lbw       1
4    8      24         16     1     0      50.00        6   run out       3
5   41     124         90     5     0      45.55        7    bowled       1
6   35      74         51     5     0      68.62        6       lbw       1
  Opposition     Ground StartDate
1 v Pakistan    Karachi 15-Nov-89
2 v Pakistan    Karachi 15-Nov-89
3 v Pakistan Faisalabad 23-Nov-89
4 v Pakistan Faisalabad 23-Nov-89
5 v Pakistan     Lahore  1-Dec-89
6 v Pakistan    Sialkot  9-Dec-89
    Runs Minutes BallsFaced Fours Sixes StrikeRate Position Dismissal Innings
342   37     125         81     5     0      45.67        4    caught       2
343   21      71         23     2     0      91.30        4   run out       4
344   32      99         53     5     0      60.37        4       lbw       2
345    1       8          5     0     0      20.00        4       lbw       4
346   10      41         24     2     0      41.66        4       lbw       2
347   74     150        118    12     0      62.71        4    caught       2
       Opposition  Ground StartDate
342   v Australia  Mohali 14-Mar-13
343   v Australia  Mohali 14-Mar-13
344   v Australia   Delhi 22-Mar-13
345   v Australia   Delhi 22-Mar-13
346 v West Indies Kolkata  6-Nov-13
347 v West Indies  Mumbai 14-Nov-13
7b. Head – SparkR
head(tendulkar1,3)
  Runs Minutes BallsFaced Fours Sixes StrikeRate Position Dismissal Innings
1   15      28         24     2     0       62.5        6    bowled       2
2  DNB       -          -     -     -          -        -         -       4
3   59     254        172     4     0       34.3        6       lbw       1
  Opposition     Ground StartDate
1 v Pakistan    Karachi 15-Nov-89
2 v Pakistan    Karachi 15-Nov-89
3 v Pakistan Faisalabad 23-Nov-89
8a. Determining the column types with sapply -R
sapply(tendulkar,class)
       Runs     Minutes  BallsFaced       Fours       Sixes  StrikeRate 
"character"   "integer"   "integer"   "integer"   "integer"   "numeric" 
   Position   Dismissal     Innings  Opposition      Ground   StartDate 
  "integer" "character"   "integer" "character" "character" "character"
8b. Determining the column types with printSchema – SparkR
printSchema(tendulkar1)
root
 |-- Runs: string (nullable = true)
 |-- Minutes: string (nullable = true)
 |-- BallsFaced: string (nullable = true)
 |-- Fours: string (nullable = true)
 |-- Sixes: string (nullable = true)
 |-- StrikeRate: string (nullable = true)
 |-- Position: string (nullable = true)
 |-- Dismissal: string (nullable = true)
 |-- Innings: string (nullable = true)
 |-- Opposition: string (nullable = true)
 |-- Ground: string (nullable = true)
 |-- StartDate: string (nullable = true)
9a. Selecting columns – R
library(dplyr)
df=select(tendulkar,Runs,BallsFaced,Minutes)
head(df,5)
  Runs BallsFaced Minutes
1   15         24      28
2  DNB         NA      NA
3   59        172     254
4    8         16      24
5   41         90     124
9b. Selecting columns – SparkR
library(SparkR)
Sys.setenv(SPARK_HOME="/usr/hdp/2.6.0.3-8/spark")
.libPaths(c(file.path(Sys.getenv("SPARK_HOME"), "R", "lib"), .libPaths()))
# Initiate a SparkR session
sparkR.session()
tendulkar1 <- read.df("/FileStore/tables/tendulkar.csv", 
                header = "true", 
                delimiter = ",", 
                source = "csv", 
                inferSchema = "true", 
                na.strings = "")
df=SparkR::select(tendulkar1, "Runs", "BF","Mins")
head(SparkR::collect(df))
  Runs  BF Mins
1   15  24   28
2  DNB   -    -
3   59 172  254
4    8  16   24
5   41  90  124
6   35  51   74
10a. Filter rows by criteria – R
library(dplyr)
df=tendulkar %>% filter(Runs > 50)
head(df,5)
  Runs Minutes BallsFaced Fours Sixes StrikeRate Position Dismissal Innings
1  DNB      NA         NA    NA    NA         NA       NA             4
2   59     254        172     4     0      34.30        6       lbw       1
3    8      24         16     1     0      50.00        6   run out       3
4   57     193        134     6     0      42.53        6    caught       3
5   88     324        266     5     0      33.08        6    caught       1
     Opposition     Ground StartDate
1    v Pakistan    Karachi 15-Nov-89
2    v Pakistan Faisalabad 23-Nov-89
3    v Pakistan Faisalabad 23-Nov-89
4    v Pakistan    Sialkot  9-Dec-89
5 v New Zealand     Napier  9-Feb-90
10b. Filter rows by criteria – SparkR
df=SparkR::filter(tendulkar1, tendulkar1$Runs > 50)
head(SparkR::collect(df))
  Runs Mins  BF 4s 6s    SR Pos Dismissal Inns     Opposition       Ground
1   59  254 172  4  0  34.3   6       lbw    1     v Pakistan   Faisalabad
2   57  193 134  6  0 42.53   6    caught    3     v Pakistan      Sialkot
3   88  324 266  5  0 33.08   6    caught    1  v New Zealand       Napier
4   68  216 136  8  0    50   6    caught    2      v England   Manchester
5  114  228 161 16  0  70.8   4    caught    2    v Australia        Perth
6  111  373 270 19  0 41.11   4    caught    2 v South Africa Johannesburg
  Start Date
1  23-Nov-89
2   9-Dec-89
3   9-Feb-90
4   9-Aug-90
5   1-Feb-92
6  26-Nov-92
11a. Unique values -R
unique(tendulkar$Runs)
  [1] "15"   "DNB"  "59"   "8"    "41"   "35"   "57"   "0"    "24"   "88"  
 [11] "5"    "10"   "27"   "68"   "119*" "21"   "11"   "16"   "7"    "40"  
 [21] "148*" "6"    "17"   "114"  "111"  "1"    "73"   "50"   "9*"   "165" 
 [31] "78"   "62"   "TDNB" "28"   "104*" "71"   "142"  "96"   "43"   "11*" 
 [41] "34"   "85"   "179"  "54"   "4"    "0*"   "52*"  "2"    "122"  "31"  
 [51] "177"  "74"   "42"   "18"   "61"   "36"   "169"  "9"    "15*"  "92"  
 [61] "83"   "143"  "139"  "23"   "148"  "13"   "155*" "79"   "47"   "113" 
 [71] "67"   "136"  "29"   "53"   "124*" "126*" "44*"  "217"  "116"  "52"  
 [81] "45"   "97"   "20"   "39"   "201*" "76"   "65"   "126"  "36*"  "69"  
 [91] "155"  "22*"  "103"  "26"   "90"   "176"  "117"  "86"   "12"   "193" 
[101] "16*"  "51"   "32"   "55"   "37"   "44"   "241*" "60*"  "194*" "3"   
[111] "32*"  "248*" "94"   "22"   "109"  "19"   "14"   "28*"  "63"   "64"  
[121] "101"  "122*" "91"   "82"   "56*"  "154*" "153"  "49"   "10*"  "103*"
[131] "160"  "100*" "105*" "100"  "106"  "84"   "203"  "98"   "38"   "214" 
[141] "53*"  "111*" "146"  "14*"  "56"   "80"   "25"   "81"   "13*"
11b. Unique values – SparkR
head(SparkR::distinct(tendulkar1[,"Runs"]),5)
  Runs
1 119*
2    7
3   51
4  169
5  32*
12a. Aggregate – Mean, min and max – R
library(dplyr)
library(magrittr)
a <- tendulkar$Runs != "DNB"
tendulkar <- tendulkar[a,]
dim(tendulkar)

# Remove rows with 'TDNB'
c <- tendulkar$Runs != "TDNB"
tendulkar <- tendulkar[c,]

# Remove rows with absent
d <- tendulkar$Runs != "absent"
tendulkar <- tendulkar[d,]
dim(tendulkar)

# Remove the "* indicating not out
tendulkar$Runs <- as.numeric(gsub("\\*","",tendulkar$Runs))
c <- complete.cases(tendulkar)

#Subset the rows which are complete
tendulkar <- tendulkar[c,]
print(dim(tendulkar))
df <-tendulkar %>%  group_by(Ground) %>% summarise(meanRuns= mean(Runs), minRuns=min(Runs), maxRuns=max(Runs)) 
#names(tendulkar)
head(df)
[1] 327  12
# A tibble: 6 x 4
  Ground       meanRuns minRuns maxRuns
                   
1 Adelaide        32.6       0.    153.
2 Ahmedabad       40.1       4.    217.
3 Auckland         5.00      5.      5.
4 Bangalore       57.9       4.    214.
5 Birmingham      46.8       1.    122.
6 Bloemfontein    85.0      15.    155.
12b. Aggregate- Mean, Min, Max – SparkR
sparkR.session()

tendulkar1 <- read.df("/FileStore/tables/tendulkar.csv", 
                header = "true", 
                delimiter = ",", 
                source = "csv", 
                inferSchema = "true", 
                na.strings = "")

print(dim(tendulkar1))
tendulkar1 <-SparkR::filter(tendulkar1,tendulkar1$Runs != "DNB")
print(dim(tendulkar1))
tendulkar1<-SparkR::filter(tendulkar1,tendulkar1$Runs != "TDNB")
print(dim(tendulkar1))
tendulkar1<-SparkR::filter(tendulkar1,tendulkar1$Runs != "absent")
print(dim(tendulkar1))

# Cast the string type Runs to double
withColumn(tendulkar1, "Runs", cast(tendulkar1$Runs, "double"))
head(SparkR::distinct(tendulkar1[,"Runs"]),20)
# Remove the "* indicating not out
tendulkar1$Runs=SparkR::regexp_replace(tendulkar1$Runs, "\\*", "")
head(SparkR::distinct(tendulkar1[,"Runs"]),20)
df=SparkR::summarize(SparkR::groupBy(tendulkar1, tendulkar1$Ground), mean = mean(tendulkar1$Runs), minRuns=min(tendulkar1$Runs),maxRuns=max(tendulkar1$Runs))
head(df,20)
[1] 347  12
[1] 330  12
[1] 329  12
[1] 329  12
          Ground       mean minRuns maxRuns
1      Bangalore  54.312500       0      96
2       Adelaide  32.600000       0      61
3  Colombo (PSS)  37.200000      14      71
4   Christchurch  12.000000       0      24
5       Auckland   5.000000       5       5
6        Chennai  60.625000       0      81
7      Centurion  73.500000     111      36
8       Brisbane   7.666667       0       7
9     Birmingham  46.750000       1      40
10     Ahmedabad  40.125000     100       8
11 Colombo (RPS) 143.000000     143     143
12    Chittagong  57.800000     101      36
13     Cape Town  69.857143      14       9
14    Bridgetown  26.000000       0      92
15      Bulawayo  55.000000      36      74
16         Delhi  39.947368       0      76
17    Chandigarh  11.000000      11      11
18  Bloemfontein  85.000000      15     155
19 Colombo (SSC)  77.555556     104       8
20       Cuttack   2.000000       2       2
13a Using SQL with SparkR
sparkR.session()
tendulkar1 <- read.df("/FileStore/tables/tendulkar.csv", 
                header = "true", 
                delimiter = ",", 
                source = "csv", 
                inferSchema = "true", 
                na.strings = "")

# Register this SparkDataFrame as a temporary view.
createOrReplaceTempView(tendulkar1, "tendulkar2")

# SQL statements can be run by using the sql method
df=SparkR::sql("SELECT * FROM tendulkar2 WHERE Ground='Karachi'")

head(df)

  Runs Mins BF 4s 6s    SR Pos Dismissal Inns Opposition  Ground Start Date
1   15   28 24  2  0  62.5   6    bowled    2 v Pakistan Karachi  15-Nov-89
2  DNB    -  -  -  -     -   -         -    4 v Pakistan Karachi  15-Nov-89
3   23   49 29  5  0 79.31   4    bowled    2 v Pakistan Karachi  29-Jan-06
4   26   74 47  5  0 55.31   4    bowled    4 v Pakistan Karachi  29-Jan-06
Conclusion

This post discusses some of the key constructs in R and SparkR and how one can transition from R to SparkR fairly easily. I will be adding more constructs later. Do check back!

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To see all posts click Index of posts